BASE Metagenomics 12899_1
Dataset size is: 4.16 GiB
Data and Resources
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12899_1_PE_550bp_BASE_AGRF_HFKW2... Metadata Only FASTQ
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12899_1_PE_550bp_BASE_AGRF_HFKW2... Metadata Only FASTQ
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BASE_metagenomics_AGRF_HFKW2BCXX... Metadata Only MD5
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BASE_metagenomics_AGRF_HFLF3BCXX... Metadata Only MD5
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BASE_metagenomics_AGRF_HCN77BCXX... Metadata Only MD5
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BASE_metagenomics_AGRF_HCWFWBCXX... Metadata Only MD5
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BASE_metagenomics_AGRF_HCWFYBCXX... Metadata Only MD5
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BASE_metagenomics_AGRF_HCGL7BCXX... Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-02-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/4rpw-zc23 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 6.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| analysis_software_version | 1.8.2 |
| archive_ingestion_date | 2015-11-20 |
| bioplatforms_dataset_id | 102.100.100/401918 |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| bioplatforms_project_code | BASE_TERN |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 1.25 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 10.1 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 0.0 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2013-09-10T00:00:00 |
| color | GR |
| conductivity (dS/m) | 0.168 |
| conductivity_meth | meth_2.1 |
| data_generated | 2015-11-20 |
| data_type | Metagenomics |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401918 |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/metagenomics/agrf/BRLOPS-738/20151120_AGRF_BPA_BASE_HFLF3BCXX/ |
| date_of_transfer | 2015-11-20 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | BASE metagenomics |
| dtpa_copper (mg/kg) | 3.2 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 233.13 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 27.36 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 1.35 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 21.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.3 National park |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.054 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 12.18 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 7.25 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 1.09 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.97 |
| exc_sodium_meth | meth_2.1 |
| facility | AGRF |
| fine_sand (%) | 0.0 |
| fine_sand_meth | meth_2.1 |
| flow_id | HFKW2BCXX |
| folder_name | 20151120_AGRF_BPA_BASE_HFLF3BCXX |
| general_env_feature | Riverine (rivers and streams) |
| geo_loc_name | Australia:South Australia [GAZ_00002791] |
| gravel (%) | 0.0 |
| gravel_meth | meth_2.1 |
| hyperspectral_analysis | DOI 10.5281/zenodo.6265730 |
| hyperspectral_analysis_meth | meth_2.26 |
| insert_size_range | 550bp |
| lat_lon (decimal_degrees) | -34.098 140.351526 |
| latitude (decimal_degrees) | -34.098 |
| library_construction_protocol | TruSeq PCR Free DNA |
| local_class | Calcarosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 140.351526 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_bioproject_accession_number | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874302 |
| ncbi_biosample_accession_number | SAMN04874302 |
| nitrate_nitrogen (mg/kg) | 1.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 3.12 |
| organic_carbon_meth | meth_2.1 |
| ph | 5.0 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.8 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 29.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 427.0 |
| potassium_colwell_meth | meth_2.1 |
| read_length | 150bp |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_extraction_id | 12899_1 |
| sample_id | 102.100.100/12899 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_site_location_description | Overland Corner |
| sample_submission_date | 2015-11-20 |
| sample_type | Soil |
| sand (%) | 38.27 |
| sand_meth | meth_2.1 |
| sequencer | HiSeq 2500 |
| silt (%) | 51.63 |
| silt_meth | meth_2.1 |
| slope_gradient (%) | 3.0 |
| source_mat_id | 102.100.100/12899 |
| store_cond | frozen |
| sulphur (mg/kg) | 42.7 |
| sulphur_meth | meth_2.1 |
| texture | 2.0 |
| texture_meth | meth_2.1 |
| ticket | BRLOPS-738 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12899 |
| utc_date_sampled | 2013-09-10 |
| vegetation_type | Forest |
| water_content (%) | 7.362534949 |
| water_content_soil_meth | meth_2.1 |