BASE Amplicons ITS 9503_1 A90G8
Dataset size is: 12.98 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2015-04-01 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
am_environment | Soil |
ammonium_nitrogen_wt (mg/kg) | 2.0 |
ammonium_nitrogen_wt_meth | meth_2.1 |
amplicon | ITS |
analysis_software_version | 2.3.32.0 |
archive_ingestion_date | 2015-01-01 |
base_amplicon_linkage | A90G8 |
base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/its/agrf/BRLOPS-288/20140326_AGRF_BASE_A90G8/ |
biotic_relationship | Free-living |
boron_hot_cacl2 (mg/kg) | 0.22 |
boron_hot_cacl2_meth | meth_2.1 |
clay (%) | 5.78 |
clay_meth | meth_2.1 |
coarse_sand (%) | 66.0 |
coarse_sand_meth | meth_2.1 |
collection_date | 2013-03-21T00:00:00 |
color | BRWH |
conductivity (dS/m) | 0.024 |
conductivity_meth | meth_2.1 |
data_generated | 2015-01-01 |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
date_of_transfer | 2015-01-01 |
depth (m) | 0.2 |
depth_lower (m) | 0.3 |
depth_upper (m) | 0.2 |
dilution | 1:10 |
dtpa_copper (mg/kg) | 0.36 |
dtpa_copper_meth | meth_2.1 |
dtpa_iron (mg/kg) | 53.02 |
dtpa_iron_meth | meth_2.1 |
dtpa_manganese (mg/kg) | 1.29 |
dtpa_manganese_meth | meth_2.1 |
dtpa_zinc (mg/kg) | 0.55 |
dtpa_zinc_meth | meth_2.1 |
elev (m) | 250.0 |
env_broad_scale | 1 Conservation and Natural Environments |
env_local_scale | 1.1.6 Protected landscape |
env_medium | Soil [ENVO_00001998] |
exc_aluminium (meq/100g) | 0.182 |
exc_aluminium_meth | meth_2.1 |
exc_calcium (meq/100g) | 1.33 |
exc_calcium_meth | meth_2.1 |
exc_magnesium (meq/100g) | 0.49 |
exc_magnesium_meth | meth_2.1 |
exc_potassium (meq/100g) | 0.12 |
exc_potassium_meth | meth_2.1 |
exc_sodium (meq/100g) | 0.06 |
exc_sodium_meth | meth_2.1 |
facility | AGRF |
facility_code | agrf |
fine_sand (%) | 22.4 |
fine_sand_meth | meth_2.1 |
flow_cell_id | A90G8 |
flow_id | A90G8 |
general_env_feature | Temperate |
geo_loc_name | Australia:South Australia |
gravel (%) | 15.0 |
gravel_meth | meth_2.1 |
hyperspectral_analysis | DOI 10.5281/zenodo.6265730 |
hyperspectral_analysis_meth | meth_2.26 |
index | TTGATGCTATGC |
lat_lon (decimal_degrees) | -34.88076 138.7083 |
latitude (decimal_degrees) | -34.88076 |
local_class | Kurosol |
local_class_meth | meth_2.27 |
longitude (decimal_degrees) | 138.7083 |
ncbi_bioproject_accession | PRJNA317932 |
ncbi_biosample_accession | SAMN04874033 |
nitrate_nitrogen (mg/kg) | 1.0 |
nitrate_nitrogen_meth | meth_2.1 |
nucl_acid_ext | meth_3.1.1 |
organic_carbon (%) | 0.99 |
organic_carbon_meth | meth_2.1 |
ph | 4.5 |
ph_meth | meth_2.1 |
ph_solid_h2o | 5.5 |
ph_solid_h2o_meth | meth_2.1 |
phosphorus_colwell (mg/kg) | 1e-10 |
phosphorus_colwell_meth | meth_2.1 |
potassium_colwell (mg/kg) | 49.0 |
potassium_colwell_meth | meth_2.1 |
read_length | 300bp |
reads | 29701 |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 9503_1 |
sample_id | 102.100.100/9503 |
sample_metadata_ingest_date | 2021-04-23 11:13:48 |
sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
sample_name | 9503_1_ITS_AGRF_TTGATGCTATGC_A90G8 |
sample_site_location_description | Athelstone |
sample_submission_date | 2015-01-01 |
sample_type | Soil |
sand (%) | 88.4 |
sand_meth | meth_2.1 |
sequencing_facility | AGRF |
sequencing_run_number | 140321_M00547_0073_000000000-A90G8 |
silt (%) | 5.83 |
silt_meth | meth_2.1 |
slope_aspect (direction_or_degrees) | 270.0 |
slope_gradient (%) | 10.0 |
source_mat_id | 102.100.100/9503 |
store_cond | frozen |
sulphur (mg/kg) | 3.6 |
sulphur_meth | meth_2.1 |
target | ITS |
texture | 1.5 |
texture_meth | meth_2.1 |
ticket | BRLOPS-288 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/9503 |
utc_date_sampled | 2013-03-21 |
vegetation_type | Woodland |
water_content (%) | 0.965406275 |
water_content_soil_meth | meth_2.1 |