Common Eastern Froglet, Reference genome, PacBio-HiFi, kidney
Dataset size is: 42.85 GiB
This dataset is currently under a short embargo period until January 15, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2025-01-15 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1552/20240115_AusARG_AGRF_CAGRF23091299_m84073_240109_065332_s1/ |
| cell_postion | A01 |
| certainty | medium-high, testes-like structures |
| class | Amphibia |
| collection_date | 2023-10-04 |
| collection_method | Collected from wild by hand |
| collector | Tiffany Kosch | Melissa Hernandez Poveda | University of Melbourne | Ben Scheele | Australian National University |
| collector_sample_id | crsi_2 |
| common_name | Common Eastern Froglet |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Tiffany Kosch |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351899 |
| date_of_transfer | 2024-01-16 |
| date_of_transfer_to_archive | 2024-01-16 |
| death_date | 2023-10-04 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF23091299 |
| facility_sample_id | 456740.0 |
| family | Myobatrachidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240109_065332_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240115_AusARG_AGRF_CAGRF23091299_m84073_240109_065332_s1 |
| genotypic_sex | male |
| genus | Crinia |
| habitat | Alpine Sphagnum Bogs and Associated Fens Ecological Community |
| identified_by | Ben Scheele |
| insert_size_range | 15200.0 |
| institution_name | University of Melbourne |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0 |
| library_id | 102.100.100/456740 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 275pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-12-19 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Snowy Flats, Namadgi National Park |
| material_conc_ng_ul | TBA |
| material_extracted_by | AGRF |
| material_extraction_method | TBA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Tiffany Kosch |
| sample_id | 102.100.100/458251 |
| sample_quality | fresh frozen |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | signifera |
| specimen_id | A4129 |
| specimen_id_description | ANWC |
| state_or_region | Australia Capital Territory |
| subspecies | NA |
| taxon_id | 326986 |
| taxonomic_group | frog |
| ticket | BPAOPS-1552 |
| tissue_number | crsi_2_kidney |
| tissue_preservation | flash_frozen |
| tissue_type | kidney |
| type_status | NA |
| voucher_or_tissue_number | A4129 |
| wild_captive | wild-caught |
| work_order | 13071 |