Common Eastern Froglet, Reference genome, PacBio-HiFi, kidney
Dataset size is: 42.85 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members |
| Access Control Date | 2024-01-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.0.0.207600 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1552/20240115_AusARG_AGRF_CAGRF23091299_m84073_240109_065332_s1/ |
| cell_postion | A01 |
| certainty | medium-high, testes-like structures |
| class | Amphibia |
| collection_date | 2023-10-04 |
| collection_method | Collected from wild by hand |
| collector | Tiffany Kosch | Melissa Hernandez Poveda | University of Melbourne | Ben Scheele | Australian National University |
| collector_sample_id | crsi_2 |
| common_name | Common Eastern Froglet |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Tiffany Kosch |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351899 |
| date_of_transfer | 2024-01-16 |
| date_of_transfer_to_archive | 2024-01-16 |
| death_date | 2023-10-04 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF23091299 |
| facility_sample_id | 456740.0 |
| family | Myobatrachidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_240109_065332_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240115_AusARG_AGRF_CAGRF23091299_m84073_240109_065332_s1 |
| genotypic_sex | male |
| genus | Crinia |
| habitat | Alpine Sphagnum Bogs and Associated Fens Ecological Community |
| identified_by | Ben Scheele |
| insert_size_range | 15200.0 |
| institution_name | University of Melbourne |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0 |
| library_id | 102.100.100/456740 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 275pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-12-19 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Snowy Flats, Namadgi National Park |
| material_conc_ng_ul | NA |
| material_extracted_by | AGRF |
| material_extraction_method | NA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-11-15 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Tiffany Kosch |
| sample_id | 102.100.100/458251 |
| sample_quality | fresh frozen |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | NA |
| species | signifera |
| specimen_id | A4129 |
| specimen_id_description | ANWC |
| state_or_region | Australia Capital Territory |
| subspecies | NA |
| taxon_id | 326986 |
| taxonomic_group | frog |
| ticket | BPAOPS-1552 |
| tissue_number | crsi_2_kidney |
| tissue_preservation | flash_frozen |
| tissue_type | kidney |
| type_status | NA |
| voucher_or_tissue_number | A4129 |
| wild_captive | wild-caught |
| work_order | 13071 |