Eungella Leaf-tailed Gecko, Reference genome, PacBio-HiFi, muscle
Dataset size is: 4.47 GiB
This dataset is currently under a short embargo period until September 13, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-09-13 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | individual for Phyllurus genome assembly |
| associated_media | IMG_5138 |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1477/20230911_AusARG_AGRF_CAGRF230414583_m84073_230825_020111_s2/ |
| cell_postion | C01 |
| certainty | very high |
| class | Lepidosauria |
| collection_date | 2023-05-12 |
| collection_method | spotlighting |
| collector | Conrad Hoskin |
| collector_sample_id | CONX6659 |
| common_name | Eungella Leaf-tailed Gecko |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351888 |
| date_of_transfer | 2023-09-14 |
| date_of_transfer_to_archive | 2023-09-15 |
| death_date | 2023-05-18 |
| decimal_latitude_public | -21.09226 |
| decimal_longitude_public | 148.54085 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 456328.0 |
| family | Carphodactylidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230825_020111_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230911_AusARG_AGRF_CAGRF230414583_m84073_230825_020111_s2 |
| genotypic_sex | not determined |
| genus | Phyllurus |
| habitat | tropical moist broadleaf forest (upland rainforest) |
| identified_by | Conrad Hoskin |
| insert_size_range | 12000.0 |
| institution_name | James Cook University |
| latitude | -21.09226 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0 |
| library_id | 102.100.100/456328 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-08-18 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult organism |
| location_text | Dalrymple Heights Road, Eungella |
| longitude | 148.54085 |
| material_conc_ng_ul | TBA |
| material_extracted_by | AGRF Adelaide |
| material_extraction_method | TBA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | presence of developing eggs |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457847 |
| sample_quality | freshly sampled |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Queensland, Eungella Uplands |
| species | nepthys |
| species_name | Phyllurus nepthys |
| specimen_id | TBA |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 136855 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1477 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX6652 |
| tissue_preservation | frozen | -80C |
| tissue_type | muscle |
| type_status | no |
| voucher_or_tissue_number | CONX6659 |
| wild_captive | wild |
| work_order | 14052 |