Southern Ornate Nursery Frog, Reference genome, PacBio-HiFi, muscle
Dataset size is: 36.51 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members |
| Access Control Date | 2023-08-31 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | individual for Cophixalus genome assembly |
| associated_media | IMG_5124 |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1466/20230821_AusARG_AGRF_CAGRF230414583_m84073_230814_035937_s4/ |
| cell_postion | A01 |
| certainty | probable (75%) |
| class | Amphibia |
| collection_date | 2023-05-15 |
| collection_method | searching under artificial nursery frog nest boxes |
| collector | Conrad Hoskin |
| collector_sample_id | CONX6642 |
| common_name | Southern Ornate Nursery Frog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351887 |
| date_of_transfer | 2023-08-21 |
| date_of_transfer_to_archive | 2023-08-23 |
| death_date | 2023-05-17 |
| decimal_latitude_public | -19.0095 |
| decimal_longitude_public | 146.20808 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 456326.0 |
| family | Microhylidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230814_035937_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230821_AusARG_AGRF_CAGRF230414583_m84073_230814_035937_s4 |
| genotypic_sex | not determined |
| genus | Cophixalus |
| habitat | tropical moist broadleaf forest (upland rainforest) |
| identified_by | Conrad Hoskin |
| insert_size_range | 13000.0 |
| institution_name | James Cook University |
| latitude | -19.0095 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0 |
| library_id | 102.100.100/456326 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-08-04 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | adjacent to Whalley Cr in Paluma Village |
| longitude | 146.20808 |
| material_conc_ng_ul | NA |
| material_extracted_by | AGRF Adelaide |
| material_extraction_method | NA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-11-15 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457845 |
| sample_quality | freshly sampled |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Queensland, Paluma Uplands |
| species | australis |
| species_name | Cophixalus australis |
| specimen_id | TBA |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 306589 |
| taxonomic_group | frog |
| ticket | BPAOPS-1466 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX6635 |
| tissue_preservation | frozen | -80C |
| tissue_type | muscle |
| type_status | no |
| voucher_or_tissue_number | CONX6642 |
| wild_captive | wild |
| work_order | 14052 |