Southern Ornate Nursery Frog, Reference genome, PacBio-HiFi, muscle
Dataset size is: 36.51 GiB
This dataset is currently under a short embargo period until August 20, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-08-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | individual for Cophixalus genome assembly |
| associated_media | IMG_5124 |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1466/20230821_AusARG_AGRF_CAGRF230414583_m84073_230814_035937_s4/ |
| cell_postion | A01 |
| certainty | probable (75%) |
| class | Amphibia |
| collection_date | 2023-05-15 |
| collection_method | searching under artificial nursery frog nest boxes |
| collector | Conrad Hoskin |
| collector_sample_id | CONX6642 |
| common_name | Southern Ornate Nursery Frog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351887 |
| date_of_transfer | 2023-08-21 |
| date_of_transfer_to_archive | 2023-08-23 |
| death_date | 2023-05-17 |
| decimal_latitude_public | -19.0095 |
| decimal_longitude_public | 146.20808 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF230414583 |
| facility_sample_id | 456326.0 |
| family | Microhylidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230814_035937_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230821_AusARG_AGRF_CAGRF230414583_m84073_230814_035937_s4 |
| genotypic_sex | not determined |
| genus | Cophixalus |
| habitat | tropical moist broadleaf forest (upland rainforest) |
| identified_by | Conrad Hoskin |
| insert_size_range | 13000.0 |
| institution_name | James Cook University |
| latitude | -19.0095 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0 |
| library_id | 102.100.100/456326 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-08-04 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult organism |
| location_text | adjacent to Whalley Cr in Paluma Village |
| longitude | 146.20808 |
| material_conc_ng_ul | TBA |
| material_extracted_by | AGRF Adelaide |
| material_extraction_method | TBA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457845 |
| sample_quality | freshly sampled |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Queensland, Paluma Uplands |
| species | australis |
| species_name | Cophixalus australis |
| specimen_id | TBA |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 306589 |
| taxonomic_group | frog |
| ticket | BPAOPS-1466 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX6635 |
| tissue_preservation | frozen | -80C |
| tissue_type | muscle |
| type_status | no |
| voucher_or_tissue_number | CONX6642 |
| wild_captive | wild |
| work_order | 14052 |