southern gastric-brooding frog, Reference genome, PacBio-HiFi, liver
Dataset size is: 509.89 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-07-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1306/20220721_AusARG_CAGRF220611154_DA162798/354000_AusARG_AGRF_DA162798_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | NA |
| class | Amphibia |
| collection_date | 1976-11-01 |
| collection_method | hand capture |
| collector | Michael Tyler |
| collector_sample_id | NA |
| common_name | southern gastric-brooding frog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Steve Donnellan |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351838 |
| dataset_url | researcher informed |
| date_of_transfer | 2022-07-21 |
| date_of_transfer_to_archive | 2022-07-25 |
| death_date | 1976-11-01 |
| description | HIFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | QAGRF220611154 |
| facility_sample_id | 354000.0 |
| family | Myobatrachidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA162798 |
| flowcell_type | SMRTcell 8M |
| folder_name | 20220721_AusARG_CAGRF220611154_DA162798 |
| genotypic_sex | not determined |
| genus | Rheobatrachus |
| habitat | unknown |
| insert_size_range | 10-20KB |
| institution_name | South Australian Museum |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/354000 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 20.8 |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2021-11-29 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | PacBio-HiFi |
| lifestage | Adult organism |
| location_text | Connondale Ranges |
| material_conc_ng_ul | 176.0 |
| material_extracted_by | Tessa Bradford |
| material_extraction_date | 2021-09-16 |
| material_extraction_method | Gentra spooling |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | NA |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | DQ283275|DQ282789|DQ284295|DQ283938|AY948938|AY948904| AY948840|AY948795|AY948762 |
| project_aim | Reference genome |
| sample_custodian | Steve Donnellan |
| sample_id | 102.100.100/352986 |
| sample_quality | excellent |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | NA |
| species | silus |
| specimen_id | ABTC7317 |
| specimen_id_description | South Australian Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 326985 |
| taxonomic_group | frog |
| ticket | BPAOPS-1306 |
| tissue_collection | Australian Biological Tissue Collection |
| tissue_number | ABTC7317 |
| tissue_preservation | liquid nitrogen | -80C |
| tissue_type | liver |
| type_status | no |
| voucher_or_tissue_number | ABTC7317 |
| wild_captive | wild |
| work_order | 13048 |