Green-eyed tree frog, Reference genome, PacBio-HiFi, muscle
Dataset size is: 35.37 GiB
This dataset is currently under a short embargo period until June 12, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-06-12 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 12.0.0.172289 |
| ancillary_notes | in amplexus with CONX5984 when collected, 50 tadpoles from this mating are sampled in ethanol |
| associated_media | photo: IMG_1692.jpg |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1417/20230612_AusARG_AGRF_CAGRF230514931_m84073_230601_040640_s4/ |
| cell_postion | D01 |
| certainty | high |
| class | Amphibia |
| collection_date | 2021-02-26 |
| collection_method | spotlighting |
| collector | Conrad Hoskin | Lorenzo Bertola | James Cook University |
| collector_sample_id | CONX5985 |
| common_name | Green-eyed tree frog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351889 |
| date_of_transfer | 2023-06-13 |
| date_of_transfer_to_archive | 2023-06-14 |
| death_date | 2021-02-28 |
| decimal_latitude_public | -17.53946 |
| decimal_longitude_public | 145.68899 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF230514931 |
| facility_sample_id | 353862.0 |
| family | Hylidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_230601_040640_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20230612_AusARG_AGRF_CAGRF230514931_m84073_230601_040640_s4 |
| genotypic_sex | not determined |
| genus | Ranoidea (Litoria) |
| habitat | tropical mixed forest biome |
| identified_by | Conrad Hoskin |
| insert_size_range | 12500.0 |
| institution_name | James Cook University |
| latitude | -17.53946 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/353862 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 90pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2022-01-20 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | prime adult stage |
| location_text | Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli, |
| longitude | 145.68899 |
| material_conc_ng_ul | TBA |
| material_extracted_by | AGRF Adelaide | Nicola Burtt |
| material_extraction_method | TBA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | presence of nuptial pads |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/352848 |
| sample_quality | freshly sampled |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Queensland, Wet Tropics, Atherton tablelands |
| species | serrata |
| species_name | Ranoidea (Litoria) serrata |
| specimen_id | TBC |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | southern lineage |
| taxon_id | 143878 |
| taxonomic_group | frog |
| ticket | BPAOPS-1417 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX5978 |
| tissue_preservation | frozen | -80C | none |
| tissue_type | muscle |
| type_status | unknown |
| voucher_or_tissue_number | CONX5985 |
| wild_captive | wild |
| work_order | 13063 |