Green-eyed tree frog, Reference genome, PacBio-HiFi, muscle
Dataset size is: 882.36 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-02-15 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| ancillary_notes | in amplexus with CONX5984 when collected, 50 tadpoles from this mating are sampled in ethanol |
| associated_media | photo: IMG_1692.jpg |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1192/20220210_AusARG_CAGRF21087917_DA149195/353862_AusARG_AGRF_DA149195_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | high |
| class | Amphibia |
| collection_date | 2021-02-26 |
| collection_method | spotlighting |
| collector | Conrad Hoskin | Lorenzo Bertola | James Cook University |
| collector_sample_id | CONX5985 |
| common_name | Green-eyed tree frog |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Megan Higgie |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351806 |
| date_of_transfer | 2022-02-15 |
| date_of_transfer_to_archive | 2022-02-15 |
| death_date | 2021-02-28 |
| decimal_latitude_public | -17.53946 |
| decimal_longitude_public | 145.68899 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF21087917 |
| facility_sample_id | 353862.0 |
| family | Hylidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA149195 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20220210_AusARG_CAGRF21087917_DA149195 |
| genotypic_sex | not determined |
| genus | Ranoidea (Litoria) |
| habitat | tropical mixed forest biome |
| identified_by | Conrad Hoskin |
| insert_size_range | 12500.0 |
| institution_name | James Cook University |
| latitude | -17.53946 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/353862 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 90pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2022-01-20 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | prime adult stage |
| location_text | Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli, |
| longitude | 145.68899 |
| material_conc_ng_ul | TBA |
| material_extracted_by | AGRF Adelaide | Nicola Burtt |
| material_extraction_method | TBA |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | presence of nuptial pads |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/352848 |
| sample_quality | freshly sampled |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Queensland, Wet Tropics, Atherton tablelands |
| species | serrata |
| species_name | Ranoidea (Litoria) serrata |
| specimen_id | TBC |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | southern lineage |
| taxon_id | 143878 |
| taxonomic_group | frog |
| ticket | BPAOPS-1192 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX5978 |
| tissue_preservation | frozen | -80C | none |
| tissue_type | muscle |
| type_status | unknown |
| voucher_or_tissue_number | CONX5985 |
| wild_captive | wild |
| work_order | 13035 |