Olive-headed seasnake, Reference Genome, PacBio-HiFi, muscle
Dataset size is: 1.08 TiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2023-02-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:d8f6c573-1790-4d61-8069-957c2d08708e |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1190/20220127_AusARG_CAGRF21119106_DA136085/350844_AusARG_AGRF_DA136085_HiFi_metadata/ |
| cell_postion | B01 |
| certainty | High |
| class | Lepidosauria |
| collection_date | 2021-05-19 |
| collection_method | Wild caught from a boat at night |
| collector | Kate Sanders | James Nankivell | Jenna Crowe-Riddell | Vinay Udywer |
| collector_sample_id | KLS1130 |
| common_name | Olive-headed seasnake |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Kate Sanders |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351827 |
| date_of_transfer | 2022-02-04 |
| date_of_transfer_to_archive | 2022-02-04 |
| death_date | 2021-05-20 |
| decimal_latitude_public | -18.052242 |
| decimal_longitude_public | 122.200767 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | QAGRF21119106 |
| facility_sample_id | 349833.0 |
| family | Hydrophiidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA136085 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20220127_AusARG_CAGRF21119106_DA136085 |
| genotypic_sex | female |
| genus | Hydrophis |
| habitat | Marine water body |
| identified_by | Kate Sanders | James Nankivell | Jenna Crowe-Riddell | Vinay Udywer |
| insert_size_range | 12538.0 |
| institution_name | University of Adelaide |
| latitude | -18.05 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350844 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 90Pm |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2021-10-12 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | Adult organism |
| location_generalisation | 1km |
| location_text | Indian Ocean, coast off Broome |
| longitude | 122.2 |
| material_extracted_by | Kate Sanders |
| material_extraction_date | 2021-06-08 |
| material_extraction_method | Gentra Spooling |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | External morphology and confirmed with disection |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| project_aim | Reference genome |
| sample_custodian | Kate Sanders |
| sample_id | 102.100.100/349833 |
| sample_quality | Contamination free | snap frozen |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Australia, Western Australia, Broome |
| species | major |
| species_name | Hydrophis major |
| specimen_id | SAMAR72044 |
| specimen_id_description | South Australian Museum |
| state_or_region | Western Australia |
| subspecies | NA |
| taxon_id | 355693 |
| taxonomic_group | snake |
| ticket | BPAOPS-1190 |
| tissue_collection | Australian Biological Tissue Collection |
| tissue_number | ABTC156318 |
| tissue_preservation | liquid nitrogen | -80 |
| tissue_type | muscle |
| type_status | Not type specimen |
| voucher_or_tissue_number | SAMAR72044 |
| wild_captive | wild |
| work_order | 13041 |