Southern grass skink, Reference genome, PacBio-HiFi, blood
Dataset size is: 428.01 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-07-19 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No_restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1114/20210714_AusARG_AGRF_DA087270/350837_AusARG_AGRF_DA087270_HiFi_metadata/ |
| cell_postion | A01 |
| certainty | 1.0 |
| class | Lepidosauria |
| collection_date | 2021-01-17 |
| collection_method | lassoo |
| collector | Oliver Griffith |
| collector_sample_id | Pe2001 |
| common_name | Southern grass skink |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Camilla Whittington |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351769 |
| date_of_transfer | 2021-07-19 |
| date_of_transfer_to_archive | 2021-07-19 |
| death_date | 2021-05-25 |
| decimal_latitude_public | -33.864278 |
| decimal_longitude_public | 150.044528 |
| description | HiFi |
| dna_treatment | Megaruptor2 - 20kb setting |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF21056800 |
| facility_sample_id | 350837.0 |
| family | Scincidae |
| file_type | bam |
| flowcell_id | DA087270 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20210714_AusARG_AGRF_DA087270 |
| genotypic_sex | male |
| genus | Pseudemoia |
| habitat | National_park |
| identified_by | Oliver Griffith |
| insert_size_range | 15-20kb |
| institution_name | University_of_Sydney |
| latitude | -33.864278 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350837 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | sheared |
| library_location | AGRF |
| library_ng_ul | 100.0 |
| library_oligo_sequence | NA |
| library_prep_date | 2021-07-01 |
| library_prepared_by | Trent Peters |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | HiFi |
| lifestage | adult |
| location_text | Kanangra-Boyd_NP |
| longitude | 150.044528 |
| material_conc_ng_ul | 330.0 |
| material_extracted_by | Oliver_Griffith |
| material_extraction_date | 2021-05-25 |
| material_extraction_method | HMW_extraction (circulomics) |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | hemipene_and_and_testis_detection |
| movie_length | 30hrs |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Camilla_Whittington |
| sample_id | 102.100.100/349813 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel® II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Kanangra-Boyd_NP |
| species | entrecasteauxii |
| species_name | Pseudemoia entrecasteauxii |
| specimen_id | Pe2001 |
| specimen_id_description | University_of_Sydney_WhittingtonLab |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 223249 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1114 |
| tissue_collection | unknown |
| tissue_number | Pe2001_blood |
| tissue_preservation | none |
| tissue_type | blood |
| voucher_or_tissue_number | Pe2001_blood |
| wild_captive | wild |
| work_order | 13021 |