Three-toed_skink, Reference genome, PacBio-HiFi, blood
Dataset size is: 776.26 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-09-07 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No_restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1131/2021093_AusARG_CAGRF21087913_DA095606/350822_AusARG_AGRF_DA095606_HiFi_metadata/ |
| cell_postion | A01 |
| certainty | 1.0 |
| class | Lepidosauria |
| collection_date | 2020-11-02 |
| collection_method | by_hand |
| collector | Jacqueline_Herbert |
| collector_sample_id | Se2033 |
| common_name | Three-toed_skink |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Camilla Whittington |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351803 |
| dataset_url | rerun of the sample/library from BPAOPS-1107 |
| date_of_transfer | 2021-09-07 |
| date_of_transfer_to_archive | 2021-09-07 |
| death_date | 2021-05-24 |
| decimal_latitude_public | -33.886429 |
| decimal_longitude_public | 151.182844 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF21087913 |
| facility_sample_id | 350822.0 |
| family | Scincidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA095606 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 2021093_AusARG_CAGRF21087913_DA095606 |
| genotypic_sex | male |
| genus | Saiphos |
| habitat | urban |
| identified_by | Camilla_Whittington |
| insert_size_range | 14885.0 |
| institution_name | University_of_Sydney |
| latitude | -33.886429 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350822 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 77pm |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2021-06-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | adult |
| location_text | Sydney |
| longitude | 151.182844 |
| material_conc_ng_ul | ~200 |
| material_extracted_by | Oliver_Griffith |
| material_extraction_date | 2021-05-24 |
| material_extraction_method | HMW extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | hemipene_and_and_testis_detection |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Camilla_Whittington |
| sample_id | 102.100.100/349812 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Sydney |
| species | equalis |
| species_name | Saiphos equalis |
| specimen_id | Se2033 |
| specimen_id_description | University_of_Sydney_WhittingtonLab |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 172942 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1131 |
| tissue_collection | unknown |
| tissue_number | Se2033_blood |
| tissue_preservation | none |
| tissue_type | blood |
| voucher_or_tissue_number | Se2033 |
| wild_captive | wild |
| work_order | 13034 |