delicate skink, Reference Genome, PacBio-HiFi, Blood
Dataset size is: 822.48 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-09-08 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 10.1.0.119549 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1133/2021093_AusARG_CAGRF21087911_DA095606/350750_AusARG_AGRF_DA095606_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | 1.0 |
| class | Reptilia |
| collection_date | 2021-02-11 |
| collection_method | By hand |
| collector | Camilla Whittington |
| common_name | delicate skink |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Oliver Griffith |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351802 |
| dataset_url | rerun of the sample/library from BPAOPS-1091 |
| date_of_transfer | 2021-09-08 |
| date_of_transfer_to_archive | 2021-09-08 |
| decimal_latitude_public | -33.883385 |
| decimal_longitude_public | 151.178649 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility | AGRF |
| facility_project_code | CAGRF21087911 |
| facility_sample_id | 350750.0 |
| family | Scincidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA095606 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 2021093_AusARG_CAGRF21087911_DA095606 |
| genotypic_sex | not determined |
| genus | Lampropholis |
| habitat | Urban park |
| identified_by | Glenn Shea |
| insert_size_range | 14211.0 |
| institution_name | University of Sydney |
| latitude | -33.883385 |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350750 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 77Pm |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2021-06-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| lifestage | Adult |
| location_text | Camperdown |
| longitude | 151.178649 |
| material_conc_ng_ul | 96.6 |
| material_extracted_by | Oliver Griffith |
| material_extraction_date | 2021-02-23 |
| material_extraction_method | Circulomics Nanobind HMW DNA blood/tissue |
| material_extraction_type | HMW DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | inspected gonads |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Camilla Whittington |
| sample_id | 102.100.100/349749 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Sequel II Sequencing Plate 2.0 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | Sydney |
| species | delicata |
| species_name | Lampropholis delicata |
| specimen_id | Ld2003 |
| specimen_id_description | Whittington Animal Lab number |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 316451 |
| taxonomic_group | skink |
| ticket | BPAOPS-1133 |
| tissue_collection | Fresh Blood |
| tissue_number | NA |
| tissue_preservation | Fresh |
| tissue_type | Blood |
| voucher_or_tissue_number | Ld2003 |
| wild_captive | Wild |
| work_order | 13032 |