shingleback/sleepy lizard/bobtail, None, PacBio-HiFi, muscle structure
Dataset size is: 841.71 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2021-11-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 9.0.0.92188 |
| ancillary_notes | Animal was taken from bundey Bore Station homestead area and was put into captivity after the life in cold blood series in 2008. In regards to the common name - given this is a South Australian animal is common name is the sleepy lizard rather than shingleback or bobtail. |
| associated_media | TrG_genomeLizard1_ventral.jpg; TrG_genomeLizard1_WholeDorsal.jpg; TrG_genomeLizard2_ventral.jpg; TrG_genomeLizard1_Head.jpg; TrG_GenomeLizard_4March2020_Face.jpg |
| ausarg_project | Reference genome |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-997/AusARG_AGRF_PacBio_C20062700/350719_AusARG_AGRF_PacBio_DA052894_DA052873_HiFi_metadata/ |
| cell_postion | C01 |
| certainty | certain |
| class | Reptilia |
| collection_date | 2008-01-01 |
| collection_method | hand capture |
| collector | Dale Burzacott |
| collector_sample_id | NA |
| common_name | shingleback/sleepy lizard/bobtail |
| country | Australia |
| data_custodian | Terry Bertozzi |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351719 |
| date_of_transfer | 2020-11-26 |
| date_of_transfer_to_archive | 2020-12-02 |
| death_date | 2020-03-04 |
| decimal_latitude_public | -33.886547 |
| decimal_longitude_public | 139.355269 |
| description | HiFi |
| dna_treatment | Megaruptor2 - 25kb setting |
| experimental_design | PacBio HiFi |
| facility | AGRF |
| facility_sample_id | M_Spool |
| family | Scincidae |
| file_name | 20201023_AusARG_AGRF_PacBio_DA052894_DA052873.ccs.bam |
| flowcell_id | DA052894 |
| flowcell_type | SMRT Cell 8M |
| folder_name | AusARG_AGRF_PacBio_C20062700 |
| genotypic_sex | male |
| genus | Tiliqua |
| habitat | xeric shrubland biome |
| identified_by | Mike Gardner |
| insert_size_range | 15860bp |
| institution_name | South Australian Museum |
| latitude | -33.886547 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/350719 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_location | AGRF |
| library_ng_ul | 70pM |
| library_oligo_sequence | NA |
| library_prep_date | 2020-10-14 |
| library_prepared_by | Trent Peters |
| library_status | Data available |
| library_type | HIFI |
| lifestage | Adult organism |
| location_text | Bundey Bore Station homestead |
| longitude | 139.355269 |
| material_conc_ng_ul | 338.0 |
| material_extracted_by | Terry Bertozzi |
| material_extraction_date | 2020-06-17 |
| material_extraction_method | Gentra Spooling |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | dissection and sexing marker |
| movie_length | 30hrs |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | spleen transcriptome |
| project_aim | Reference genome |
| sample_custodian | Terry Bertozzi | Michael Gardner |
| sample_id | 102.100.100/349719 |
| sample_quality | excellent |
| sequencing_facility | AGRF |
| sequencing_platform | PacBio Sequel II |
| source_population | NA |
| species | rugosa |
| species_name | Tiliqua rugosa |
| specimen_id | SAMAR71619 |
| specimen_id_description | South Australian Museum |
| state_or_region | South Australia |
| subspecies | asper |
| taxon_id | 8527 |
| taxonomic_group | lizard |
| ticket | BPAOPS-997 |
| tissue_collection | Australian Biological Tissue Collection |
| tissue_number | ABTC151652 |
| tissue_preservation | liquid nitrogen | -80C |
| tissue_type | muscle structure |
| type_status | no |
| voucher_number | SAMAR71619 |
| voucher_or_tissue_number | SAMAR71619 |
| wild_captive | wild (captive since 2008) |
| work_order | 13001 |