Litchfield spotted gecko, Reference Genome, ONT-promethion, tail

Gekkonidae, Gehyra paranana, P374, lizard, Project Lead: Emily Roycroft

Dataset size is: 1.20 TiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2023-11-29
Access Control Mode date
Sequence Data Type ONT-promethion
ala_specimen_url NA
analysis_software MinKNOW Core 5.2.4, Bream 7.2.9, Guppy 6.2.11
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1347/20221108_AusARG_BRF_PAM11664/
cell_postion 2A
certainty high
class Reptilia
collector Keith Christian
collector_sample_id P374
common_name Litchfield spotted gecko
country Australia
data_context Reference Genome
data_custodian Emily Roycroft
data_type ONT-promethion
dataset_id 102.100.100/351854
dataset_url researcher informed
date_of_transfer 2022-11-29
date_of_transfer_to_archive 2022-12-01
decimal_latitude_public -13.124
decimal_longitude_public 130.804
description PromethION
experimental_design WGS by ligation
facility BRF
facility_project_code NA
facility_sample_id ONT_gDNA66_419-1
family Gekkonidae
fast5_compression vbz
file_type fastq, fast5
flowcell_id PAM11664
flowcell_type PromethION R10.4.1M
folder_name 20221108_AusARG_BRF_PAM11664
genus Gehyra
identified_by Craig Moritz
insert_size_range 39Kb
institution_name Australian National University
latitude -13.124
library_comments Genomic DNA with 20Kb+ blue pippin size selection
library_construction_protocol LSK114
library_id 102.100.100/414131
library_location ANU BRF
library_ng_ul 29.4
library_prep_date 2022-11-08
library_prepared_by Carolina Correa-Ospina
library_selection size fractionation
library_source GENOMIC
library_strategy WGS
library_type ONT PromethION
lifestage adult
location_text Litchfield National Park
longitude 130.804
material_conc_ng_ul 177.0
material_extracted_by Emily Roycroft
material_extraction_date 2022-10-12
material_extraction_method Circulomics NanoBind HMW kit
material_extraction_type DNA
metadata_revision_date 2024-01-25
metadata_revision_filename AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx
method_of_determination external and internal mophology
model_base_caller High accuracy
order Squamata
phenotypic_sex female
phylum Chordata
prior_genetics NA
project_aim Reference genome
sample_custodian Craig Moritz
sample_id 102.100.100/411656
sample_quality high
sequencing_facility BRF
sequencing_kit_chemistry_version LSK114
sequencing_model PromethION
sequencing_platform OXFORD_NANOPORE
species paranana
species_name Gehyra paranana
specimen_id P374
specimen_id_description ANU tissue collection
state_or_region Northern Territory
subspecies NA
taxon_id 95113
taxonomic_group lizard
ticket BPAOPS-1347
tissue_collection Moritz Lab ANU
tissue_number P374
tissue_preservation frozen -80
tissue_type tail
type_status no
voucher_or_tissue_number P374
wild_captive wild
work_order 13051