Eastern three-lined skink, Reference Genome, ONT-promethion, muscle - body
Dataset size is: 247.50 GiB
Data and Resources
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
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350766_AusARG_RamaciottiGarvan_P... Metadata Only XLSX
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
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350766_PAG07318_AusARG_Ramaciott... Metadata Only TAR
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-02-15 |
| Access Control Mode | date |
| Sequence Data Type | ONT-promethion |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11 |
| analysis_software_version | MinKNOW 20.06.18, MinKNOW Core 4.0.5, Bream 6.0.10, Guppy 4.0.11 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/promethion/BPAOPS-1040/20210209_AusARG_RamaciottiGarvan_PAG07318/ |
| cell_postion | 2C |
| certainty | High |
| class | Reptilia |
| collection_date | 2018-12-12 |
| collection_method | Field work |
| collector | Duminda Dissanayake |
| collector_sample_id | DDBD_364 |
| common_name | Eastern three-lined skink |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Arthur Georges |
| data_type | ONT-promethion |
| dataset_id | 102.100.100/351747 |
| date_of_transfer | 2021-02-15 |
| date_of_transfer_to_archive | 2021-03-04 |
| decimal_latitude_public | -35.52487778 |
| decimal_longitude_public | 148.7829583 |
| description | PromethION |
| experimental_design | ONT PromethION |
| facility | RamaciottiGarvan |
| facility_project_code | Q0004734 |
| facility_sample_id | PLPN265151 |
| family | Scincidae |
| flowcell_id | PAG07318 |
| flowcell_type | PromethION (R9.4) |
| folder_name | 20210209_AusARG_RamaciottiGarvan_PAG07318 |
| genotypic_sex | male |
| genus | Bassiana |
| habitat | Alpine |
| identified_by | Duminda Dissanayake |
| insert_size_range | >60 |
| institution_name | University of Canberra |
| latitude | -35.52487778 |
| library_comments | genomic DNA |
| library_construction_protocol | LSK109 |
| library_id | 102.100.100/350766 |
| library_location | BPA |
| library_ng_ul | 350.0 |
| library_pcr_cycles | 0 |
| library_pcr_reps | 0 |
| library_prep_date | 2020-11-16 |
| library_prepared_by | Igor S. |
| library_status | Data available |
| library_type | Ligation |
| lifestage | adult |
| location_text | Mt Ginini |
| longitude | 148.7829583 |
| material_conc_ng_ul | 217.0 |
| material_extracted_by | Duminda Dissanayake |
| material_extraction_date | 2020-11-23 |
| material_extraction_method | DNA - Spooling technique |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | PCR sex test |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | 10x genomics |
| project_aim | Reference genome |
| sample_custodian | Arthur Georges |
| sample_id | 102.100.100/349747 |
| sample_quality | high |
| sequencing_facility | Ramaciotti/Garvan |
| sequencing_platform | ONT PromethION |
| source_population | Mt Ginini |
| species | duperreyi |
| species_name | Bassiana duperreyi |
| specimen_id | DDBD_364 |
| specimen_id_description | University of Canberra |
| state_or_region | ACT |
| subspecies | NA |
| taxon_id | 316450 |
| taxonomic_group | skink |
| ticket | BPAOPS-1040 |
| tissue_collection | University of Canberra |
| tissue_number | DDBD_364_A |
| tissue_preservation | ethanol |
| tissue_type | muscle - body |
| type_status | NA |
| voucher_or_tissue_number | AA094425 |
| wild_captive | wild-caught |
| work_order | 13010 |