Common Eastern Froglet, Reference genome, Illumina-transcriptomics, liver
Dataset size is: 22.48 GiB
This dataset is currently under a short embargo period until January 15, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
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456746_AusARG_AGRF_22H37WLT3_CAT... Metadata Only FASTQ
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
Access Control Date | 2025-01-15 |
Access Control Mode | date |
Sequence Data Type | Illumina-transcriptomics |
access_rights | No restrictions |
ala_specimen_url | NA |
analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
analysis_software_version | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
ancillary_notes | NA |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1550/20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3/ |
bioplatforms_dataset_id | 102.100.100/351900 |
bioplatforms_library_id | 102.100.100/456746 |
bioplatforms_sample_id | 102.100.100/458257 |
certainty | medium-high, testes-like structures |
class | Amphibia |
collection_date | 2023-10-04 |
collection_method | Collected from wild by hand |
collector | Tiffany Kosch | Melissa Hernandez Poveda | University of Melbourne | Ben Scheele | Australian National University |
collector_sample_id | crsi_2 |
common_name | Common Eastern Froglet |
country | Australia |
data_context | Reference genome |
data_custodian | Tiffany Kosch |
data_type | Illumina-transcriptomics |
dataset_id | 102.100.100/351900 |
date_of_transfer | 2024-01-16 |
date_of_transfer_to_archive | 2024-01-16 |
death_date | 2023-10-04 |
description | RNA-seq |
facility | AGRF |
facility_project_code | CAGRF23091299 |
facility_sample_id | 15370-6 |
family | Myobatrachidae |
file_type | fastq.gz |
flowcell_id | 22H37WLT3 |
flowcell_type | 10B-300 |
folder_name | 20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3 |
genotypic_sex | male |
genus | Crinia |
habitat | Alpine Sphagnum Bogs and Associated Fens Ecological Community |
identified_by | Ben Scheele |
insert_size_range | 180 bp |
institution_name | University of Melbourne |
library_construction_protocol | Illumina Stranded mRNA |
library_id | 102.100.100/456746 |
library_index_id_dual | UDP0078-F & UDP0078-R |
library_index_seq_dual | CATTAGTGCG-TGACTACATA |
library_layout | Paired-End |
library_location | AGRF Melbourne |
library_ng_ul | 33.2 |
library_pcr_cycles | 13 |
library_prep_date | 2023-12-26 |
library_prepared_by | LJ |
library_selection | PolyA |
library_source | TRANSCRIPTOMIC |
library_strategy | RNA-Seq |
library_type | Illumina-transcriptomics |
lifestage | adult |
location_text | Snowy Flats, Namadgi National Park |
material_conc_ng_ul | TBA |
material_extracted_by | AGRF |
material_extraction_method | TBA |
material_extraction_type | RNA |
metadata_revision_date | 2024-01-25 |
metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
method_of_determination | dissection |
order | Anura |
phenotypic_sex | male |
phylum | Chordata |
prior_genetics | NA |
project_aim | Reference genome |
sample_custodian | Tiffany Kosch |
sample_id | 102.100.100/458257 |
sample_quality | fresh frozen |
scientific_name | Crinia signifera |
sequencing_facility | AGRF |
sequencing_kit_chemistry_version | XLEAP-SBS |
sequencing_model | NovaSeq X Plus |
sequencing_platform | ILLUMINA |
species | signifera |
specimen_id | A4129 |
specimen_id_description | ANWC |
state_or_region | Australia Capital Territory |
subspecies | NA |
taxon_id | 326986 |
taxonomic_group | frog |
ticket | BPAOPS-1550 |
tissue_number | crsi_2_liver |
tissue_preservation | RNA_shield |
tissue_type | liver |
type_status | NA |
voucher_or_tissue_number | A4129 |
wild_captive | wild-caught |
work_order | 13071 |