Common Eastern Froglet, Reference genome, Illumina-transcriptomics, brain

Myobatrachidae, Crinia signifera, A4129, frog, Project Lead: Tiffany Kosch

Dataset size is: 40.38 GiB

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Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2025-01-15
Access Control Mode date
Sequence Data Type Illumina-transcriptomics
access_rights No restrictions
ala_specimen_url NA
analysis_software NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert
analysis_software_version v1.2.0.28691; v4.6.7; v07.021.645.4.0.3
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1550/20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3/
bioplatforms_dataset_id 102.100.100/351900
bioplatforms_library_id 102.100.100/456744
bioplatforms_sample_id 102.100.100/458255
certainty medium-high, testes-like structures
class Amphibia
collection_date 2023-10-04
collection_method Collected from wild by hand
collector Tiffany Kosch | Melissa Hernandez Poveda | University of Melbourne | Ben Scheele | Australian National University
collector_sample_id crsi_2
common_name Common Eastern Froglet
country Australia
data_context Reference genome
data_custodian Tiffany Kosch
data_type Illumina-transcriptomics
dataset_id 102.100.100/351900
date_of_transfer 2024-01-16
date_of_transfer_to_archive 2024-01-16
death_date 2023-10-04
description RNA-seq
facility AGRF
facility_project_code CAGRF23091299
facility_sample_id 15370-4
family Myobatrachidae
file_type fastq.gz
flowcell_id 22H37WLT3
flowcell_type 10B-300
folder_name 20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3
genotypic_sex male
genus Crinia
habitat Alpine Sphagnum Bogs and Associated Fens Ecological Community
identified_by Ben Scheele
insert_size_range 180 bp
institution_name University of Melbourne
library_construction_protocol Illumina Stranded mRNA
library_id 102.100.100/456744
library_index_id_dual UDP0076-F & UDP0076-R
library_index_seq_dual CTGACTCTAC-ACGGCCGTCA
library_layout Paired-End
library_location AGRF Melbourne
library_ng_ul 87.8
library_pcr_cycles 13
library_prep_date 2023-12-26
library_prepared_by LJ
library_selection PolyA
library_source TRANSCRIPTOMIC
library_strategy RNA-Seq
library_type Illumina-transcriptomics
lifestage adult
location_text Snowy Flats, Namadgi National Park
material_conc_ng_ul TBA
material_extracted_by AGRF
material_extraction_method TBA
material_extraction_type RNA
metadata_revision_date 2024-01-25
metadata_revision_filename AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx
method_of_determination dissection
order Anura
phenotypic_sex male
phylum Chordata
prior_genetics NA
project_aim Reference genome
sample_custodian Tiffany Kosch
sample_id 102.100.100/458255
sample_quality fresh frozen
scientific_name Crinia signifera
sequencing_facility AGRF
sequencing_kit_chemistry_version XLEAP-SBS
sequencing_model NovaSeq X Plus
sequencing_platform ILLUMINA
species signifera
specimen_id A4129
specimen_id_description ANWC
state_or_region Australia Capital Territory
subspecies NA
taxon_id 326986
taxonomic_group frog
ticket BPAOPS-1550
tissue_number crsi_2_brain
tissue_preservation RNA_shield
tissue_type brain
type_status NA
voucher_or_tissue_number A4129
wild_captive wild-caught
work_order 13071