Eungella Leaf-tailed Gecko, Transcriptome, Illumina-transcriptomics, gonads
Dataset size is: 8.61 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members |
| Access Control Date | 2023-10-19 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1487/20230929_AusARG_UNSW_22C5YVLT3/ |
| bioplatforms_dataset_id | 102.100.100/351886 |
| bioplatforms_library_id | 102.100.100/456324 |
| bioplatforms_sample_id | 102.100.100/457843 |
| certainty | very high |
| class | Lepidosauria |
| collection_date | 2023-05-12 |
| collection_method | spotlighting |
| collector | Conrad Hoskin |
| collector_sample_id | CONX6651 |
| common_name | Eungella Leaf-tailed Gecko |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Megan Higgie |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351886 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-10 |
| death_date | 2023-05-18 |
| decimal_latitude_public | -21.09226 |
| decimal_longitude_public | 148.54085 |
| description | RNA-seq |
| facility | UNSW |
| facility_project_code | Q0011702 |
| facility_sample_id | HIG12399A11 |
| family | Carphodactylidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_AusARG_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Phyllurus |
| habitat | tropical moist broadleaf forest (upland rainforest) |
| identified_by | Conrad Hoskin |
| insert_size_range | 150 PE |
| institution_name | James Cook University |
| latitude | -21.09226 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/456324 |
| library_index_id_dual | UDP0076 |
| library_index_seq_dual | CTGACTCTAC-TGACGGCCGT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.7741916991 |
| library_pcr_cycles | 10 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-08-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult |
| location_text | Dalrymple Heights Road, Eungella |
| longitude | 148.54085 |
| material_conc_ng_ul | NA |
| material_extracted_by | Garvan |
| material_extraction_method | NA |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-11-15 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx |
| method_of_determination | presence of testis |
| n_libraries_pooled | 25 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457843 |
| sample_quality | freshly sampled |
| scientific_name | Phyllurus nepthys |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | Australia, Queensland, Eungella Uplands |
| species | nepthys |
| specimen_id | TBA |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 136855 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1487 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX6648 |
| tissue_preservation | frozen | -80C |
| tissue_type | gonads |
| type_status | no |
| voucher_or_tissue_number | CONX6651 |
| wild_captive | wild |
| work_order | 14055 |