Eungella Leaf-tailed Gecko, Transcriptome, Illumina-transcriptomics, gonads
Dataset size is: 6.44 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1487/20230929_AusARG_UNSW_22C5YVLT3/ |
| bioplatforms_dataset_id | 102.100.100/351886 |
| bioplatforms_library_id | 102.100.100/456324 |
| bioplatforms_sample_id | 102.100.100/457843 |
| certainty | very high |
| class | Lepidosauria |
| collection_date | 2023-05-12 |
| collection_method | spotlighting |
| collector | Conrad Hoskin |
| collector_sample_id | CONX6651 |
| common_name | Eungella Leaf-tailed Gecko |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Megan Higgie |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351886 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-10 |
| death_date | 2023-05-18 |
| decimal_latitude_public | -21.09226 |
| decimal_longitude_public | 148.54085 |
| description | RNA-seq |
| facility | UNSW |
| facility_project_code | Q0011702 |
| facility_sample_id | HIG12399A11 |
| family | Carphodactylidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_AusARG_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Phyllurus |
| habitat | tropical moist broadleaf forest (upland rainforest) |
| identified_by | Conrad Hoskin |
| insert_size_range | 150 PE |
| institution_name | James Cook University |
| latitude | -21.09226 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/456324 |
| library_index_id_dual | UDP0076 |
| library_index_seq_dual | CTGACTCTAC-TGACGGCCGT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 1.7741916991 |
| library_pcr_cycles | 10 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-08-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult organism |
| location_text | Dalrymple Heights Road, Eungella |
| longitude | 148.54085 |
| material_conc_ng_ul | TBA |
| material_extracted_by | Garvan |
| material_extraction_method | TBA |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | presence of testis |
| n_libraries_pooled | 25 |
| order | Squamata |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457843 |
| sample_quality | freshly sampled |
| scientific_name | Phyllurus nepthys |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | Australia, Queensland, Eungella Uplands |
| species | nepthys |
| specimen_id | TBA |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | NA |
| taxon_id | 136855 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1487 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX6648 |
| tissue_preservation | frozen | -80C |
| tissue_type | gonads |
| type_status | no |
| voucher_or_tissue_number | CONX6651 |
| wild_captive | wild |
| work_order | 14055 |