Green-eyed tree frog, Transcriptome, Illumina-transcriptomics, kidney
Dataset size is: 7.96 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
Access Control Date | 2024-10-08 |
Access Control Mode | date |
Sequence Data Type | Illumina-transcriptomics |
access_rights | No restrictions |
ala_specimen_url | NA |
analysis_software | BCLConvert |
analysis_software_version | 4.1.7 |
ancillary_notes | in amplexus with CONX5985 when collected, 50 tadpoles from this mating are sampled in ethanol |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1487/20230929_AusARG_UNSW_22C5YVLT3/ |
bioplatforms_dataset_id | 102.100.100/351885 |
bioplatforms_library_id | 102.100.100/456316 |
bioplatforms_sample_id | 102.100.100/457835 |
certainty | high |
class | Amphibia |
collection_date | 2021-02-26 |
collection_method | spotlighting |
collector | Conrad Hoskin | Lorenzo Bertola | James Cook University |
collector_sample_id | CONX5984 |
common_name | Green-eyed tree frog |
country | Australia |
data_context | Transcriptome |
data_custodian | Megan Higgie |
data_type | Illumina-transcriptomics |
dataset_id | 102.100.100/351885 |
date_of_transfer | 2023-10-09 |
date_of_transfer_to_archive | 2023-10-10 |
death_date | 2021-02-28 |
decimal_latitude_public | -17.53946 |
decimal_longitude_public | 145.68899 |
description | RNA-seq |
facility | UNSW |
facility_project_code | Q0011702 |
facility_sample_id | HIG12399A3 |
family | Hylidae |
file_type | fastq.gz |
flowcell_id | 22C5YVLT3 |
flowcell_type | NovaSeq X 10B |
folder_name | 20230929_AusARG_UNSW_22C5YVLT3 |
genotypic_sex | not determined |
genus | Ranoidea (Litoria) |
habitat | tropical mixed forest biome |
identified_by | Conrad Hoskin |
insert_size_range | 150 PE |
institution_name | James Cook University |
latitude | -17.53946 |
library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
library_id | 102.100.100/456316 |
library_index_id_dual | UDP0068 |
library_index_seq_dual | CACGGAACAA-GTGCTAGGTT |
library_layout | paired end |
library_location | Ramaciotti Centre for Genomics |
library_ng_ul | 0.3696713357 |
library_pcr_cycles | 10 |
library_pcr_reps | 1 |
library_prep_date | 2023-08-21 |
library_prepared_by | Ramaciotti Centre for Genomics |
library_selection | Oligo-dT |
library_source | TRANSCRIPTOMIC |
library_strategy | RNA-Seq |
library_type | Illumina-transcriptomics |
lifestage | prime adult stage |
location_text | Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli, |
longitude | 145.68899 |
material_conc_ng_ul | TBA |
material_extracted_by | Garvan |
material_extraction_method | TBA |
material_extraction_type | RNA |
metadata_revision_date | 2024-01-25 |
metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
method_of_determination | size and colour. Female are much larger than males and lack nuptial pads. In addition, this female was collected while in amplexus with CONX5982 (sample ID 349770). |
n_libraries_pooled | 25 |
order | Anura |
phenotypic_sex | female |
phylum | Chordata |
prior_genetics | NA |
project_aim | Reference genome |
sample_custodian | Megan Higgie | Conrad Hoskin |
sample_id | 102.100.100/457835 |
sample_quality | freshly sampled |
scientific_name | Ranoidea (Litoria) serrata |
sequencing_facility | Ramaciotti Centre for Genomics |
sequencing_kit_chemistry_version | NovaSeq X v1.0 |
sequencing_model | Illumina NovaSeq X Plus |
sequencing_platform | ILLUMINA |
source_population | Australia, Queensland, Wet Tropics, Atherton tablelands |
species | serrata |
specimen_id | TBC |
specimen_id_description | Queensland Museum |
state_or_region | Queensland |
subspecies | southern lineage |
taxon_id | 143878 |
taxonomic_group | frog |
ticket | BPAOPS-1487 |
tissue_collection | Adaptation Lab (Higgie & Hoskin) |
tissue_number | CONX5960 |
tissue_preservation | frozen | -80C |
tissue_type | kidney |
type_status | unknown |
voucher_or_tissue_number | CONX5984 |
wild_captive | wild |
work_order | 14055 |