Green-eyed tree frog, Transcriptome, Illumina-transcriptomics, gonads
Dataset size is: 8.77 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | individual from which genome is being assembled; in amplexus with CONX5984 when collected, 50 tadpoles from this mating are sampled in ethanol |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1487/20230929_AusARG_UNSW_22C5YVLT3/ |
| bioplatforms_dataset_id | 102.100.100/351885 |
| bioplatforms_library_id | 102.100.100/456315 |
| bioplatforms_sample_id | 102.100.100/457834 |
| certainty | high |
| class | Amphibia |
| collection_date | 2021-02-26 |
| collection_method | spotlighting |
| collector | Conrad Hoskin | Lorenzo Bertola | James Cook University |
| collector_sample_id | CONX5985 |
| common_name | Green-eyed tree frog |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Megan Higgie |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351885 |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-10 |
| death_date | 2021-02-28 |
| decimal_latitude_public | -17.53946 |
| decimal_longitude_public | 145.68899 |
| description | RNA-seq |
| facility | UNSW |
| facility_project_code | Q0011702 |
| facility_sample_id | HIG12399A2 |
| family | Hylidae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20230929_AusARG_UNSW_22C5YVLT3 |
| genotypic_sex | not determined |
| genus | Ranoidea (Litoria) |
| habitat | tropical mixed forest biome |
| identified_by | Conrad Hoskin |
| insert_size_range | 150 PE |
| institution_name | James Cook University |
| latitude | -17.53946 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/456315 |
| library_index_id_dual | UDP0067 |
| library_index_seq_dual | AGGATGTGCT-GGAATTGTAA |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 0.9288461633 |
| library_pcr_cycles | 10 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-08-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | prime adult stage |
| location_text | Tributary of North Johnstone River, 200 m north-east from Mungalli Creek Dairy Café, Brooks Rd, Mungalli, |
| longitude | 145.68899 |
| material_conc_ng_ul | TBA |
| material_extracted_by | Garvan |
| material_extraction_method | TBA |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | presence of nuptial pads |
| n_libraries_pooled | 25 |
| order | Anura |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Megan Higgie | Conrad Hoskin |
| sample_id | 102.100.100/457834 |
| sample_quality | freshly sampled |
| scientific_name | Ranoidea (Litoria) serrata |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | Australia, Queensland, Wet Tropics, Atherton tablelands |
| species | serrata |
| specimen_id | TBC |
| specimen_id_description | Queensland Museum |
| state_or_region | Queensland |
| subspecies | southern lineage |
| taxon_id | 143878 |
| taxonomic_group | frog |
| ticket | BPAOPS-1487 |
| tissue_collection | Adaptation Lab (Higgie & Hoskin) |
| tissue_number | CONX5972 |
| tissue_preservation | frozen | -80C |
| tissue_type | gonads |
| type_status | unknown |
| voucher_or_tissue_number | CONX5985 |
| wild_captive | wild |
| work_order | 14055 |