Southern Ornate Nursery Frog, Transcriptome, Illumina-transcriptomics, heart
Dataset size is: 7.63 GiB
This dataset is currently under a short embargo period until October 8, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
Access Control Date | 2024-10-08 |
Access Control Mode | date |
Sequence Data Type | Illumina-transcriptomics |
access_rights | No restrictions |
ala_specimen_url | NA |
analysis_software | BCLConvert |
analysis_software_version | 4.1.7 |
ancillary_notes | NA |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1487/20230929_AusARG_UNSW_22C5YVLT3/ |
bioplatforms_dataset_id | 102.100.100/351884 |
bioplatforms_library_id | 102.100.100/456312 |
bioplatforms_sample_id | 102.100.100/457831 |
certainty | probable (75%) |
class | Amphibia |
collection_date | 2023-05-15 |
collection_method | searching under artificial nursery frog nest boxes |
collector | Conrad Hoskin |
collector_sample_id | CONX6643 |
common_name | Southern Ornate Nursery Frog |
country | Australia |
data_context | Transcriptome |
data_custodian | Megan Higgie |
data_type | Illumina-transcriptomics |
dataset_id | 102.100.100/351884 |
date_of_transfer | 2023-10-09 |
date_of_transfer_to_archive | 2023-10-10 |
death_date | 2023-05-17 |
decimal_latitude_public | -19.0095 |
decimal_longitude_public | 146.20808 |
description | RNA-seq |
facility | UNSW |
facility_project_code | Q0011702 |
facility_sample_id | HIG12399A16 |
family | Microhylidae |
file_type | fastq.gz |
flowcell_id | 22C5YVLT3 |
flowcell_type | NovaSeq X 10B |
folder_name | 20230929_AusARG_UNSW_22C5YVLT3 |
genotypic_sex | not determined |
genus | Cophixalus |
habitat | tropical moist broadleaf forest (upland rainforest) |
identified_by | Conrad Hoskin |
insert_size_range | 150 PE |
institution_name | James Cook University |
latitude | -19.0095 |
library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
library_id | 102.100.100/456312 |
library_index_id_dual | UDP0081 |
library_index_seq_dual | TGTCGCTGGT-AGTCAGACGA |
library_layout | paired end |
library_location | Ramaciotti Centre for Genomics |
library_ng_ul | 0.9593205051 |
library_pcr_cycles | 10 |
library_pcr_reps | 1 |
library_prep_date | 2023-08-21 |
library_prepared_by | Ramaciotti Centre for Genomics |
library_selection | Oligo-dT |
library_source | TRANSCRIPTOMIC |
library_strategy | RNA-Seq |
library_type | Illumina-transcriptomics |
lifestage | adult organism |
location_text | adjacent to Whalley Cr in Paluma Village |
longitude | 146.20808 |
material_conc_ng_ul | TBA |
material_extracted_by | Garvan |
material_extraction_method | TBA |
material_extraction_type | RNA |
metadata_revision_date | 2024-01-25 |
metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
method_of_determination | dissection |
n_libraries_pooled | 25 |
order | Anura |
phenotypic_sex | female |
phylum | Chordata |
prior_genetics | NA |
project_aim | Reference genome |
sample_custodian | Megan Higgie | Conrad Hoskin |
sample_id | 102.100.100/457831 |
sample_quality | freshly sampled |
scientific_name | Cophixalus australis |
sequencing_facility | Ramaciotti Centre for Genomics |
sequencing_kit_chemistry_version | NovaSeq X v1.0 |
sequencing_model | Illumina NovaSeq X Plus |
sequencing_platform | ILLUMINA |
source_population | Australia, Queensland, Paluma Uplands |
species | australis |
specimen_id | TBA |
specimen_id_description | Queensland Museum |
state_or_region | Queensland |
subspecies | NA |
taxon_id | 306589 |
taxonomic_group | frog |
ticket | BPAOPS-1487 |
tissue_collection | Adaptation Lab (Higgie & Hoskin) |
tissue_number | CONX6630 |
tissue_preservation | frozen | -80C |
tissue_type | heart |
type_status | no |
voucher_or_tissue_number | CONX6643 |
wild_captive | wild |
work_order | 14055 |