Litchfield spotted gecko, Reference Genome, Illumina-HiC, liver + tail muscle
Dataset size is: 73.97 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2022-07-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| access_rights | No restrictions |
| ala_specimen_url | https://bie.ala.org.au/species/urn:lsid:biodiversity.org.au:afd.taxon:98fc0a93-3c72-4ee9-ad14-27847a9b3c37 |
| analysis_software_version | Bcl2Fastq |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | 171910.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/genomics-hi-c/BPAOPS-1115/20210716_AusARG_BRF_HFYWKDRXY/20210716_AusARG_BRF_HFYWKDRXY/ |
| bioplatforms_dataset_id | 351782 |
| bioplatforms_library_id | 350846-350847 |
| bioplatforms_sample_id | 349835-349836 |
| certainty | high |
| class | Reptilia |
| collection_date | 2019-06-16 |
| collection_method | unknown |
| collector | Craig Moritz |
| collector_sample_id | CCM7825 |
| common_name | Litchfield spotted gecko |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Emily Roycroft |
| data_type | Illumina-HiC |
| dataset_id | 102.100.100/351782 |
| date_of_transfer | 2021-07-21 |
| date_of_transfer_to_archive | 2021-07-21 |
| decimal_latitude_public | -13.12576 |
| decimal_longitude_public | 130.80212 |
| description | HiC |
| experimental_design | Phase Proximo HiC |
| facility | BRF |
| facility_project_code | NA |
| facility_sample_id | 350847_HFYWKDRXY_ACGACAGA |
| family | Gekkonidae |
| file_type | FASTQ |
| flowcell_id | HFYWKDRXY |
| flowcell_type | Novaseq SP |
| folder_name | 20210716_AusARG_BRF_HFYWKDRXY |
| genotypic_sex | female |
| genus | Gehyra |
| identified_by | Craig Moritz |
| insert_size_range | 150 bp PE |
| institution_name | Australian National University |
| latitude | -13.12576 |
| library_construction_protocol | Phase Genomics Promixo HiC Kit |
| library_id | 350847 |
| library_index_id | D1 |
| library_index_seq | ACGACAGA |
| library_layout | paired-end |
| library_location | ANU EBL |
| library_ng_ul | 7.8 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2021-05-10 |
| library_prepared_by | Emily Roycroft |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | Hi-C |
| library_type | HiC |
| lifestage | adult |
| location_text | Florence Falls Turn: Litchfield NP |
| longitude | 130.80212 |
| material_conc_ng_ul | unknown |
| material_extracted_by | Emily Roycroft |
| material_extraction_date | 2021-05-10 |
| material_extraction_method | Phase Promixo HiC Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-05-22 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240522_FORDATAPORTAL.xlsx |
| method_of_determination | external and internal mophology |
| n_libraries_pooled | 2 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Craig Moritz |
| sample_id | 102.100.100/349836 |
| sample_quality | high |
| scientific_name | Gehyra lapistola and Gehyra paranana |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | 300 cycles |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| species | paranana |
| specimen_id | CCM7825 |
| specimen_id_description | ANU tissue collection |
| state_or_region | Northern Territory |
| subspecies | NA |
| taxon_id | 95113 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1115 |
| tissue_collection | Moritz Lab ANU |
| tissue_number | CCM7825 |
| tissue_preservation | frozen -80 |
| tissue_type | liver + tail muscle |
| type_status | no |
| voucher_or_tissue_number | CCM7825 |
| wild_captive | wild |
| work_order | 13027 |