Conservation genomics, Illumina-ddRAD
Dataset size is: 103.80 GiB
Data and Resources
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351861_AusARG_AGRF_H2G2GDRX3_GCC... Metadata Only FASTQ
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AusARG_AGRF_CAGRF221112615_H2G2G... Metadata Only XLSX
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351861_AusARG_AGRF_H2G2GDRX3_GTG... Metadata Only FASTQ
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351861_AusARG_AGRF_H2G2GDRX3_ACA... Metadata Only FASTQ
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351861_AusARG_AGRF_H2G2GDRX3_GCC... Metadata Only FASTQ
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351861_AusARG_AGRF_H2G2GDRX3_CTT... Metadata Only FASTQ
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351861_AusARG_AGRF_H2G2GDRX3_ACA... Metadata Only FASTQ
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351861_AusARG_AGRF_H2G2GDRX3_GTG... Metadata Only FASTQ
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351861_AusARG_AGRF_CAGRF22111261... Metadata Only TAR
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351861_AusARG_AGRF_H2G2GDRX3_CTT... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-03-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| ala_specimen_url | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/ddrad/BPAOPS-1363/20230309_AusARG_AGRF_CAGRF221112615_H2G2GDRX3/ |
| bpa_dataset_id | 102.100.100/351861 |
| certainty | NA |
| class | Reptilia |
| country | Australia |
| data_context | Conservation genomics |
| data_custodian | Callum McDiarmid |
| data_type | Illumina-ddRAD |
| dataset_id | 102.100.100/351861 |
| date_of_transfer | 2023-03-17 |
| date_of_transfer_to_archive | 2023-03-17 |
| description | Short reads |
| experimental_design | PstI/MspI |
| facility_project_code | CAGRF221112615 |
| family | Scincidae |
| flowcell_id | H2G2GDRX3 |
| flowcell_type | SP 300 |
| folder_name | 20230309_AusARG_AGRF_CAGRF221112615_H2G2GDRX3 |
| genotypic_sex | not determined |
| genus | Lampropholis |
| insert_size_range | 280-375bp |
| library_construction_protocol | ddRAD (based on Peterson et al 2012) |
| library_location | AGRF Melbourne |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_date | 2023-02-23 |
| library_prepared_by | Simon Farrelly |
| library_selection | Restriction Digest |
| library_source | GENOMIC |
| library_strategy | RAD-Seq |
| library_type | ddRAD |
| lifestage | unknown |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-01-25 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20240125_FORDATAPORTAL.xlsx |
| method_of_determination | NA |
| n_libraries_pooled | 4.0 |
| order | Squamata |
| phenotypic_sex | not determined |
| phylum | Animalia |
| prior_genetics | NA |
| sample_quality | NA |
| sequencing_facility | AGRF Melbourne |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| subspecies | NA |
| taxonomic_group | reptile |
| ticket | BPAOPS-1363 |
| tissue_preservation | ethanol |
| type_status | unknown |
| wild_captive | wild |
| work_order | 13057 |