Mallee Black-headed Snake, Phylogenomics, Illumina Capture, unknown
Dataset size is: 863.56 MiB
This dataset is currently under a short embargo period until May 3, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
Access Control Date | 2025-05-03 |
Access Control Mode | date |
Sequence Data Type | Illumina Capture |
access_rights | No restrictions |
ala_specimen_url | 0cc78c49-d0fd-4b1d-a0a9-eb849115c780 |
analysis_software | Bcl2Fastq |
ancillary_notes | NA |
associated_media | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1578/20240503_AusARG_BRF_351864_222VTMLT1/ |
certainty | NA |
class | Reptilia |
collection_date | 2004-10-16 |
collection_method | unknown |
collector | unknown |
collector_sample_id | unknown |
common_name | Mallee Black-headed Snake |
country | Australia |
data_context | Phylogenomics |
data_custodian | Scott Keogh |
data_type | Illumina Capture |
dataset_id | 102.100.100/351864 |
date_of_transfer | 2024-05-03 |
date_of_transfer_to_archive | 2024-05-07 |
decimal_latitude_public | -34.4175 |
decimal_longitude_public | 137.443333 |
description | Short reads |
dna_treatment | 5 Bioruptor cycles |
experimental_design | Capture probes |
facility | BRF |
family | Elapidae |
file_type | FASTQ |
flowcell_id | 222VTMLT1 |
flowcell_type | Novaseq X |
folder_name | 20240305_AusARG_BRF_222VTMLT1 |
genotypic_sex | not determined |
genus | Suta |
habitat | unknown |
identified_by | unknown |
insert_size_range | 150bp PE |
institution_name | South Australian Museum |
latitude | -34.4175 |
library_comments | NA |
library_construction_protocol | NEXTFLEX_2.0_RapidDNASeq |
library_id | 102.100.100/455499 |
library_index_id | p7_UDI_1083 |
library_index_id_dual | p5_UDI_1083 |
library_index_seq | CACAGTTGTC |
library_index_seq_dual | AGCCTGCCTA |
library_layout | paired end |
library_location | EBL Freezer |
library_ng_ul | 0.7 |
library_oligo_sequence | GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACAGTTGTCATCTCGTATGCCGTCTTCTGCTTG |
library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACAGCCTGCCTAACACTCTTTCCCTACACGACGCTCTTCCGATCT |
library_pcr_cycles | 7 |
library_pcr_reps | 4 |
library_prep_date | 2024-03-28 |
library_prepared_by | Liz Broady |
library_selection | Hybrid Selection |
library_source | GENOMIC |
library_strategy | Targeted-Capture |
library_type | Exon Capture |
lifestage | not determined |
location_text | 5.4km WSW of Point Pearce Mission |
longitude | 137.443333 |
material_conc_ng_ul | 11.4 |
material_extracted_by | Liz Broady |
material_extraction_date | 2023-02-09 |
material_extraction_method | Salt extraction |
material_extraction_type | DNA |
metadata_revision_date | 2024-05-22 |
metadata_revision_filename | AusARG_Metadata_master_QCIF_20240522_FORDATAPORTAL.xlsx |
method_of_determination | NA |
n_libraries_pooled | 192 |
order | Squamata |
phenotypic_sex | not determined |
phylum | Chordata |
prior_genetics | unknown |
project_aim | Phylogenomics |
sample_custodian | Scott Keogh |
sample_id | 102.100.100/454018 |
sample_quality | unknown |
sequencing_facility | Biomolecular Research Facility - ANU |
sequencing_kit_chemistry_version | 300 cycles |
sequencing_model | NovaSeq X |
sequencing_platform | Illumina |
source_population | NA |
species | spectabilis |
species_name | Suta spectabilis |
specimen_id | ABTC85858 |
specimen_id_description | South Australian Museum |
state_or_region | South Australia |
subspecies | NA |
taxon_id | 531317 |
taxonomic_group | Elapidae |
ticket | BPAOPS-1578 |
tissue_collection | Australian Biological Tissue Collection |
tissue_number | ABTC85858 |
tissue_preservation | ethanol |
tissue_type | unknown |
type_status | NA |
voucher_or_tissue_number | ABTC85858 |
wild_captive | wild |
work_order | 13078 |