Peaceful Delma, Phylogenomics, Illumina Capture, liver

Pygopodidae, Delma pax, WAM R175439, lizard | gecko, Project Lead: Ian Brennan

Dataset size is: 807.64 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members
Access Control Date 2022-05-04
Access Control Mode date
Sequence Data Type Illumina Capture
access_rights No restrictions
ala_specimen_url NA
analysis_software Bcl2Fastq
ancillary_notes NA
associated_media NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/exon_capture/brf/BPAOPS-1066/
certainty NA
class Reptilia
collection_date 2016-07-21
collection_method Raked from spoils heap
collector Paul Doughty | Ian Brennan
collector_sample_id NA
common_name Peaceful Delma
country Australia
data_context Phylogenomics
data_custodian Ian Brennan
data_type Illumina Capture
dataset_id 102.100.100/351767
date_of_transfer 2021-05-04
date_of_transfer_to_archive 2021-05-10
decimal_latitude_public -20.62501
decimal_longitude_public 120.74932
description Short reads
dna_treatment Fragmentation by Covaris
experimental_design Perkin Elmer DNA-Seq Rapid 2.0 Libraries with Arbor (Daicel) Biosciences Exon Capture - dual index
facility BRF
facility_project_code NA
facility_sample_id 349781_AHHVV2AFX2_AAGTGACTTG
family Pygopodidae
file_type FASTQ
flowcell_id AHHVV2AFX2
flowcell_type Mid output 300 cycles
folder_name 20210504_AusARG_BRF_AHHVV2AFX2
genotypic_sex not determined
genus Delma
habitat unknown
identified_by Ian Brennan
insert_size_range 150 bp PE
institution_name Western Australian Museum
latitude -20.62501
library_comments Full library reaction; qubit 27.5 ng/uL
library_construction_protocol NEXTFLEX Rapid DNA-Seq Kit 2.0
library_id 102.100.100/350791
library_index_id P7_UDI_0003
library_index_id_dual P5_UID_0003
library_index_seq AAGTGACTTG
library_index_seq_dual CATAAACGTC
library_layout paired end
library_location ANU EBL Freezer
library_ng_ul 27.5
library_oligo_sequence GATCGGAAGAGCACACGTCTGAACTCCAGTCAC aagtgacttgATCTCGTATGCCGTCTTCTGCTTG
library_oligo_sequence_dual AATGATACGGCGACCACCGAGATCTACAC cataaacgtcACACTCTTTCCCTACACGACGCTCTTCCGATCT
library_pcr_cycles 4
library_pcr_reps 1
library_prep_date 2021-02-18
library_prepared_by Ian Brennan
library_selection Hybrid Selection
library_source GENOMIC
library_strategy Targeted-Capture
library_type Exon capture
lifestage adult
location_text Pilbara
longitude 120.74932
material_conc_ng_ul 100.0
material_extracted_by Ian Brennan
material_extraction_date 2020-09-01
material_extraction_method Salt extraction
material_extraction_type DNA
metadata_revision_date 2024-05-22
metadata_revision_filename AusARG_Metadata_master_QCIF_20240522_FORDATAPORTAL.xlsx
method_of_determination NA
n_libraries_pooled 32
order Squamata
phenotypic_sex not determined
phylum Chordata
prior_genetics NA
project_aim Phylogenomics
sample_custodian Paul Doughty
sample_id 102.100.100/349781
sample_quality unknown
sequencing_facility Biomolecular Research Facility - ANU
sequencing_kit_chemistry_version NextSeq 500 midoutput 300 cycles V2.5
sequencing_model NextSeq 500
sequencing_platform Illumina
source_population NA
species pax
species_name Delma pax
specimen_id WAM R175439
specimen_id_description Western Australian Museum
state_or_region Western Australia
subspecies NA
taxon_id 207590
taxonomic_group lizard | gecko
ticket BPAOPS-1066
tissue_collection Herpetology (R)
tissue_number WAM R175439
tissue_preservation -80C | ethanol
tissue_type liver
type_status non type
voucher_or_tissue_number WAM R175439
wild_captive wild
work_order 13018