ARP Transcriptomics Hiseq 51147

ARP Transcriptomics Hiseq Raw Data: Streptococcus pyogenes HKU419 RPMI_modified Replicate 2

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Field	Value
Resource Permissions	organization_member
Sequence Data Type	illumina-transcriptomics
analytical_platform	HiSeq
barcode_tag	AGTACTCC-AACCTGTT
casava_version	bcl2fastq v2.20.0.422
contact_researcher	Mark Walker
contextual_data_submission_date	2018-04-05
culture_collection_date	2012-02-23
culture_collection_id	SP850
data_generated	True
data_type	Main dataset
facility	AGRF
flow_cell_ids	CCRF1ANXX
gram_stain	POS
growth_condition_growth_phase	Mid log phase
growth_condition_media	RPMI_modified
growth_condition_od600_reading	0.4
growth_condition_temperature	37.0
growth_condition_time_(h)	1.5 hrs
growth_media	RPMI_modified
host_age	NA
host_description	NA
host_disease_outcome	Scarlet fever
host_dob	NA
host_location	Hong Kong, China
isolation_source	Blood culture
key_virulence_genes	SpeB +ve; Horizontally acquired virulence and resistance determinants associated with scarlet fever
library_construction_protocol	Truseq Stranded mRNA
omics	Transcriptomics
publication_reference	Scientific Reports 5: 15877 (2015)
replicate	2
sample	51515
sample_id	102.100.100/51147
sample_submission_date	2018-04-05
sample_type	RNA
sequencer	HiSeq 2500
serovar	M1T1 clone
strain_description	Isolated from ongoing outbreak (over 150,000 cases in China)
strain_or_isolate	HKU419
taxon_or_organism	Streptococcus pyogenes
ticket	BPAOPS-664
volume_ul	34.0