ARP Transcriptomics Hiseq 51042

ARP Transcriptomics Hiseq Raw Data: Escherichia coli MS14384 RPMI Replicate 2

Dataset size is: 2.26 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type illumina-transcriptomics
analytical_platform HiSeq
archive_ingestion_dates 12/02/2018
barcode_tag AGTACTCC-AACCTGTT
casava_version bcl2fastq v2.20.0.422
contact_researcher Jon Iredell
contextual_data_submission_date 2017-11-14
culture_collection_date 2016-06-01
culture_collection_id JIE4039#1
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC24MANXX
gram_stain NEG
growth_condition_growth_phase Mid log phase
growth_condition_media RPMI
growth_condition_od600_reading 0.4
growth_condition_temperature 37.0
growth_condition_time_(h) 1 hr
growth_media RPMI
host_age 62
host_disease_outcome Urosepsis and bacteraemia
host_location New South Wales, Australia (Westmead Hospital)
host_sex F
isolation_source Blood
key_virulence_genes Chromosomal blaCMY-2
library_construction_protocol Truseq Stranded mRNA
omics Transcriptomics
replicate 2
sample 51515
sample_id 102.100.100/51042
sample_submission_date 2017-10-16
sample_type RNA
sequencer HiSeq 2500
strain_description ST963
strain_or_isolate MS14384
taxon_or_organism Escherichia coli
ticket BPAOPS-511
volume_ul 34.0