ARP Transcriptomics Hiseq 51039

ARP Transcriptomics Hiseq Raw Data: Escherichia coli B36 Pooled sera Replicate 3

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Field	Value
Resource Permissions	organization_member
Sequence Data Type	illumina-transcriptomics
analytical_platform	HiSeq
archive_ingestion_dates	12/02/2018
barcode_tag	AGTACTCC-AACCTGTT
casava_version	bcl2fastq v2.20.0.422
contact_researcher	Mark Schembri
contextual_data_submission_date	2017-11-14
culture_collection_date	2007-06-??
culture_collection_id	B36EC; MS11317
data_generated	True
data_type	Main dataset
facility	AGRF
flow_cell_ids	CC24MANXX
gram_stain	NEG
growth_condition_growth_phase	N/A
growth_condition_media	Pooled sera
growth_condition_od600_reading	N/A
growth_condition_temperature	37.0
growth_condition_time_(h)	2 hrs exposure to sera
growth_media	Pooled sera
host_disease_outcome	Pyelonephritis
host_location	Queensland, Australia (Queen Elizabeth II Jubilee Hosptial, Brisbane)
host_sex	F
isolation_source	Blood
key_virulence_genes	kpsMTII, fimH, afa/dra, iha, iutA, fyuA; Clade C2 ST131
library_construction_protocol	Truseq Stranded mRNA
omics	Transcriptomics
publication_reference	PNAS.111(15):5694-9 (2014)
replicate	3
sample	51515
sample_id	102.100.100/51039
sample_submission_date	2017-11-13
sample_type	RNA
sequencer	HiSeq 2500
strain_description	ST131
strain_or_isolate	B36
taxon_or_organism	Escherichia coli
ticket	BPAOPS-511
volume_ul	34.0