ARP Transcriptomics Hiseq 51033

ARP Transcriptomics Hiseq Raw Data: Escherichia coli B36 RPMI Replicate 1

Dataset size is: 2.37 GiB

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type illumina-transcriptomics
analytical_platform HiSeq
archive_ingestion_dates 12/02/2018
barcode_tag AGTACTCC-AACCTGTT
casava_version bcl2fastq v2.20.0.422
contact_researcher Mark Schembri
contextual_data_submission_date 2017-11-14
culture_collection_date 2007-06-??
culture_collection_id B36EC; MS11317
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC24MANXX
gram_stain NEG
growth_condition_growth_phase Mid log phase
growth_condition_media RPMI
growth_condition_od600_reading 0.4
growth_condition_temperature 37.0
growth_condition_time_(h) 1 hr
growth_media RPMI
host_disease_outcome Pyelonephritis
host_location Queensland, Australia (Queen Elizabeth II Jubilee Hosptial, Brisbane)
host_sex F
isolation_source Blood
key_virulence_genes kpsMTII, fimH, afa/dra, iha, iutA, fyuA; Clade C2 ST131
library_construction_protocol Truseq Stranded mRNA
omics Transcriptomics
publication_reference PNAS.111(15):5694-9 (2014)
replicate 1
sample 51515
sample_id 102.100.100/51033
sample_submission_date 2017-10-16
sample_type RNA
sequencer HiSeq 2500
strain_description ST131
strain_or_isolate B36
taxon_or_organism Escherichia coli
ticket BPAOPS-511
volume_ul 34.0