ARP Transcriptomics Hiseq 50277

ARP Transcriptomics Hiseq Raw Data: Streptococcus pneumoniae 4496 Pooled sera Replicate 1

Dataset size is: 1.62 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type illumina-transcriptomics
analytical_platform HiSeq
archive_ingestion_dates 21/12/2017
barcode_tag AGTACTCC-AACCTGTT
casava_version bcl2fastq v2.20.0.422
contact_researcher James Paton/Richard Harvey
contextual_data_submission_date 2017-10-31
culture_collection_date 1988-06-07
data_generated True
data_type Main dataset
facility AGRF
flow_cell_ids CC1K3ANXX, CC2K5ANXX
gram_stain POS
growth_condition_growth_phase N/A
growth_condition_media N/A
growth_condition_od600_reading 0.5
growth_condition_temperature 37.0
growth_condition_time_(h) 2 hrs exposure to sera
growth_media Pooled sera
host_location Victoria, Australia (Melbourne)
host_sex M
isolation_source Blood
key_virulence_genes Low hemolytic Ply
library_construction_protocol Truseq Stranded mRNA
omics Transcriptomics
publication_reference Infect. Immun. 79(1):4122-30 (2011)
replicate 1
sample 51515
sample_id 102.100.100/50277
sample_submission_date 2017-10-31
sample_type RNA
sequencer HiSeq 2500
serovar 1
strain_description Highly virulent in animal models (ST3018)
strain_or_isolate 4496
taxon_or_organism Streptococcus pneumoniae
ticket BPAOPS-445