ARP Proteomics MS1Quantification 51000
Dataset size is: 2.50 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | proteomics |
| acquisition_mode_fragmentation | DDA Top12 / HCD |
| analytical_platform | MS1 quantification |
| archive_ingestion_date | 2018-05-15 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/sepsis/proteomics/raw/ms1quantification/mbpf/BPAOPS-606/ |
| contact_researcher | Steven Djordjevic |
| contextual_data_submission_date | 2017-11-14 |
| culture_collection_id | E. coli strain 2009-25 |
| data_generated | True |
| data_type | Main dataset |
| facility | MBPF |
| facility_code | mbpf |
| gradient_time | 120.0 |
| gram_stain | NEG |
| growth_condition_growth_phase | Mid log phase |
| growth_condition_media | RPMI |
| growth_condition_od600_reading | 0.4 |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | 1 hr |
| growth_media | RPMI |
| host_age | 72 |
| host_disease_outcome | Urosepsis |
| host_location | New South Wales, Australia (Sydney Adventist Hospital) |
| host_sex | M |
| isolation_source | Blood |
| key_virulence_genes | Multi-drug resistant extended-spectrum beta lactamase producer. Carries a copper resistance operon and hlyE. Paired urine isolate available. |
| lc_column_type | Thermo Ultimate 3000 RSLCnano / Thermo Acclaim PepMap RSLC P/N 164540 |
| mass_spectrometer | Thermo QExactivePlus |
| omics | Proteomics |
| peptide_resuspension_protocol | Tip-probe sonicate 2x 30s in solvent intended for injection (e.g 90% MeCN/0.1% TFA) |
| protein_yield_facility | 446.0 |
| protein_yield_total | 892.0 |
| raw_file_name | 51000_SEP_MBPF_MS_QEPlus1_P16_0062_Exp18.raw |
| replicate | 4 |
| sample_id | 102.100.100/51000 |
| sample_on_column | 2.0 |
| sample_submission_date | 2017-11-13 |
| sample_type | HLB-cleaned dried peptides |
| strain_description | ST648 |
| strain_or_isolate | MS14385 |
| taxon_or_organism | Escherichia coli |
| ticket | BPAOPS-606 |
| treatment | 10mM DTT, 20mM IAA, 1:25µg trypsin 37C 24h |