ARP Metabolomics GCMS 50942

ARP Metabolomics GCMS Raw Data: Escherichia coli MS14385 RPMI Replicate 6

Dataset size is: 12.97 MiB

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type metabolomics
acquisition_mode Negative Ion (45-600 mz: 2000 scan speed)
archive_ingestion_date 2018-07-12
contact_researcher Steven Djordjevic
contextual_data_submission_date 14/11/17
culture_collection_id E. coli strain 2009-25
data_generated True
data_type Main dataset
facility MA
gc_column_type Agilent DB-5; 1um film thicknes; 0.250mm diameter; 30m length
gradient_time_min_flow 37 minutes method: starting temp 100°C with hold time of 4 minutes. Temperature ramped up by 10°C per minute for 22 minutes and held at 320°C for 11 minutes.
gram_stain NEG
growth_media RPMI
host_age 72
host_disease_outcome Urosepsis
host_location New South Wales, Australia (Sydney Adventist Hospital)
host_sex M
isolation_source Blood
key_virulence_genes Multi-drug resistant extended-spectrum beta lactamase producer. Carries a copper resistance operon and hlyE. Paired urine isolate available.
mass_spectrometer Shimadzu TQ8040
omics Metabolomics
raw_file_name 50942_Sep_MA_GCMS_MS85R-6-581-33942_Bio21_GC-QQQ-Shimadzu.qgd
replicate 6
sample_fractionation_extract_solvent Polar metabolite / Methanol:Water
sample_id 102.100.100/50942
sample_submission_date 13/11/17
strain_description ST648
strain_or_isolate MS14385
taxon_or_organism Escherichia coli
ticket BPAOPS-631