Sepsis Genomics Pacbio 25765

ARP Genomics Pacbio Raw Data: Escherichia coli B36 Luria broth Replicate 1

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Field	Value
Resource Permissions	organization_member
Sequence Data Type	pacbio-clr
analytical_facility	Ramaciotti
archive_ingestion_date	2016-09-12
cell_position	A01
contact_researcher	Mark Schembri
contextual_data_submission_date	2016-07-20
culture_collection_date	2007-06-??
culture_collection_id	B36EC; MS11317
data_generated	True
data_type	Main dataset
experimental_replicate	1
experimental_sample_preparation_method	MoBio genomic DNA extraction kit
facility	RAMACIOTTI
gram_stain	NEG
growth_condition_media	Luria broth
growth_condition_temperature	37.0
growth_condition_time_(h)	Overnight growth
growth_media	Luria broth
host_disease_outcome	Pyelonephritis
host_location	Queensland, Australia (Queen Elizabeth II Jubilee Hosptial, Brisbane)
host_sex	F
insert_size_range	15-50kb
isolation_source	Blood
key_virulence_genes	kpsMTII, fimH, afa/dra, iha, iutA, fyuA; Clade C2 ST131
library_construction_protocol	20kb template prep_blue pippin
omics	Genomics
publication_reference	PNAS.111(15):5694-9 (2014)
replicate	1
rs_version	RS Remote v2.3
sample_id	102.100.100/25765
sample_submission_date	2016-07-16
sequencer	PacBio RSII
sequencer_run_id	m160905_053933_42272
smrt_cell_id	c101094922550000001823234702241750
strain_description	ST131
strain_or_isolate	B36
taxon_or_organism	Escherichia coli
ticket	BPAOPS-3
work_order	Work order 2