Sepsis Genomics Pacbio 25708

ARP Genomics Pacbio Raw Data: Streptococcus pyogenes PS003 THY broth Replicate 1

Dataset size is: 1.67 GiB

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Sequence Data Type pacbio-clr
analytical_facility Ramaciotti
archive_ingestion_date 2016-05-27
cell_position F01
contact_researcher Mark Walker
contextual_data_submission_date 2016-01-22
culture_collection_date 2010-07-05
culture_collection_id SP474
data_generated True
data_type Main dataset
experimental_replicate 1
experimental_sample_preparation_method Phenol-Chloroform
facility RAMACIOTTI
gram_stain POS
growth_condition_media THY broth
growth_condition_temperature 37.0
growth_condition_time_(h) Overnight growth
growth_media THY broth
host_age NA
host_description NA
host_disease_outcome Puerperal sepsis
host_dob NA
host_location New South Wales, Australia
host_sex F
insert_size_range 15-50Kb
isolation_source Vaginal swab
key_virulence_genes SpeB +ve, PCR +ve for GBS genes (vaginal colonisation)
library_construction_protocol PacBio SMRTbell20kb template prep_blue pippin
omics Genomics
publication_reference J Clin Micro 50:2224-2228 (2012)
replicate 1
rs_version RS Remote v2.3
sample_id 102.100.100/25708
sample_submission_date 2016-01-20
sequencer PacBioRSII
sequencer_run_id m160305_063753
serovar M77, unusual M type associated with peurperal sepsis
smrt_cell_id c100950162550000001823211206101605
strain_description Isolated during suspected outbreak in NSW, Australia
strain_or_isolate PS003
taxon_or_organism Streptococcus pyogenes
ticket BRLOPS-812
work_order Work order 5