Sepsis Genomics Pacbio 25705

ARP Genomics Pacbio Raw Data: Streptococcus pyogenes 5448 THY broth Replicate 1

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Field	Value
Resource Permissions	organization_member
Sequence Data Type	pacbio-clr
analytical_facility	Ramaciotti
archive_ingestion_date	2016-05-27
cell_position	C01
contact_researcher	Mark Walker
contextual_data_submission_date	2016-01-22
culture_collection_date	pre-2000
culture_collection_id	SP137
data_generated	True
data_type	Main dataset
experimental_replicate	1
experimental_sample_preparation_method	Phenol-Chloroform
facility	RAMACIOTTI
gram_stain	POS
growth_condition_media	THY broth
growth_condition_temperature	37.0
growth_condition_time_(h)	Overnight growth
growth_media	THY broth
host_age	NA
host_description	NA
host_disease_outcome	Toxic shock syndrome and necrotizing fasciitis
host_dob	NA
host_location	Ontario, Canada
insert_size_range	15-50Kb
isolation_source	Blood
key_virulence_genes	SpeB +ve
library_construction_protocol	PacBio SMRTbell20kb template prep_blue pippin
omics	Genomics
publication_reference	Infect Immun 68: 6362-6369 (2000)
replicate	1
rs_version	RS Remote v2.3
sample_id	102.100.100/25705
sample_submission_date	2016-01-20
sequencer	PacBioRSII
sequencer_run_id	m160304_174004
serovar	M1T1 clone
smrt_cell_id	c100950162550000001823211206101602
strain_description	Extensively studied, global reference strain. Representative of serotype M1T1 clone. Tn-seq library available
strain_or_isolate	5448
taxon_or_organism	Streptococcus pyogenes
ticket	BRLOPS-812
work_order	Work order 5