Sepsis Genomics Miseq 25787
Dataset size is: 298.71 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysis_software_version | 2.6.2.3 |
| analytical_facility | Ramaciotti |
| archive_ingestion_date | 2016-08-18 |
| contact_researcher | James Paton/Claudia Trappetti |
| contextual_data_submission_date | 2016-04-26 |
| culture_collection_date | 1988-11-11 |
| data_generated | True |
| data_type | Main dataset |
| experimental_replicate | 1 |
| experimental_sample_preparation_method | Qiagen kit with 100/G genomic tip |
| facility | RAMACIOTTI |
| gram_stain | POS |
| growth_condition_media | THY broth |
| growth_condition_notes | THY broth (recommend using filtered not autoclaved broth as some of the strains don't seem to grow when media has been overheated) |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | No shaking, grow daytime |
| growth_media | THY broth |
| host_location | South Australia, Australia (Adelaide) |
| insert_size_range | 150-2000 |
| isolation_source | Blood |
| key_virulence_genes | Unknown but likely has a prophage and ~4 kb plasmid |
| library_construction_protocol | Nextera XT |
| omics | Genomics |
| publication_reference | Infect Immun. 83(12):4781-90 (2015) |
| replicate | 1 |
| sample_id | 102.100.100/25787 |
| sample_submission_date | 2016-04-26 |
| sequencer | MiSeq |
| serovar | 14 |
| strain_description | ST15 |
| strain_or_isolate | 4559 |
| taxon_or_organism | Streptococcus pneumoniae |
| ticket | BRLOPS-847 |
| work_order | Work order 3 |