Sepsis Genomics Miseq 25767
Dataset size is: 523.96 MiB
Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysis_software_version | 2.6.1.1 |
| analytical_facility | Ramaciotti |
| archive_ingestion_date | 2016-11-30 |
| contact_researcher | Steven Djordjevic |
| contextual_data_submission_date | 2016-07-20 |
| culture_collection_id | E. coli strain 2009-25 |
| data_generated | True |
| data_type | Main dataset |
| experimental_replicate | 1 |
| experimental_sample_preparation_method | MoBio genomic DNA extraction kit |
| facility | RAMACIOTTI |
| gram_stain | NEG |
| growth_condition_media | Luria broth |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | Overnight growth |
| growth_media | Luria broth |
| host_age | 72 |
| host_disease_outcome | Urosepsis |
| host_location | New South Wales, Australia (Sydney Adventist Hospital) |
| host_sex | M |
| insert_size_range | 150-2000 |
| isolation_source | Blood |
| key_virulence_genes | Multi-drug resistant extended-spectrum beta lactamase producer. Carries a copper resistance operon and hlyE. Paired urine isolate available. |
| library_construction_protocol | Nextera XT |
| omics | Genomics |
| replicate | 1 |
| sample_id | 102.100.100/25767 |
| sample_submission_date | 2016-07-16 |
| sequencer | MiSeq |
| strain_description | ST648 |
| strain_or_isolate | MS14385 |
| taxon_or_organism | Escherichia coli |
| ticket | BPAOPS-61 |
| work_order | Work order 2 |