Sepsis Genomics Miseq 25748
Dataset size is: 356.47 MiB
Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysis_software_version | 2.6.2.3 |
| analytical_facility | Ramaciotti |
| archive_ingestion_date | 2016-08-18 |
| contact_researcher | Tim Stinear |
| contextual_data_submission_date | 2016-05-07 |
| culture_collection_date | 2008-08-09 |
| data_generated | True |
| data_type | Main dataset |
| experimental_replicate | 1 |
| experimental_sample_preparation_method | Phenol-chloroform; Phase-lock gel tubes |
| facility | RAMACIOTTI |
| gram_stain | POS |
| growth_condition_media | BHI broth |
| growth_condition_notes | Horse blood agar for streaking (from glycerol) then overnight in BHI broth |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | Overnight growth |
| growth_media | BHI broth |
| host_age | 80 |
| host_disease_outcome | Bacteraemia |
| host_location | Victoria, Australia (Melbourne) |
| host_sex | M |
| insert_size_range | 150-2000 |
| isolation_source | Blood culture |
| library_construction_protocol | Nextera XT |
| omics | Genomics |
| publication_reference | Holmes, N. et al., - unpublished |
| replicate | 1 |
| sample_id | 102.100.100/25748 |
| sample_submission_date | 2016-05-07 |
| sequencer | MiSeq |
| strain_description | ST239 MRSA |
| strain_or_isolate | BPH2947 |
| taxon_or_organism | Staphylococcus aureus |
| ticket | BRLOPS-847 |
| work_order | Work order 4 |