Sepsis Genomics Miseq 25707
Dataset size is: 802.01 MiB
Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Sequence Data Type | illumina-shortread |
| analysis_software_version | 2.6.2.3 |
| analytical_facility | Ramaciotti |
| archive_ingestion_date | 2016-05-25 |
| contact_researcher | Mark Walker |
| contextual_data_submission_date | 2016-01-22 |
| culture_collection_date | 2012-02-23 |
| culture_collection_id | SP850 |
| data_generated | True |
| data_type | Main dataset |
| experimental_replicate | 1 |
| experimental_sample_preparation_method | Phenol-Chloroform |
| facility | RAMACIOTTI |
| gram_stain | POS |
| growth_condition_media | THY broth |
| growth_condition_temperature | 37.0 |
| growth_condition_time_(h) | Overnight growth |
| growth_media | THY broth |
| host_age | NA |
| host_description | NA |
| host_disease_outcome | Scarlet fever |
| host_dob | NA |
| host_location | Hong Kong, China |
| insert_size_range | 150-2000 |
| isolation_source | Blood culture |
| key_virulence_genes | SpeB +ve; Horizontally acquired virulence and resistance determinants associated with scarlet fever |
| library_construction_protocol | Nextera XT |
| omics | Genomics |
| publication_reference | Scientific Reports 5: 15877 (2015) |
| replicate | 1 |
| sample_id | 102.100.100/25707 |
| sample_submission_date | 2016-01-20 |
| sequencer | MiSeq |
| serovar | M1T1 clone |
| strain_description | Isolated from ongoing outbreak (over 150,000 cases in China) |
| strain_or_isolate | HKU419 |
| taxon_or_organism | Streptococcus pyogenes |
| ticket | BRLOPS-805 |
| work_order | Work order 5 |