Australian Microbiome Metagenomics Novaseq 102.100.100/57806
Dataset size is: 43.74 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2021-06-09 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| absorbance_260_230_ratio | 2.42 |
| absorbance_260_280_ratio | 2.34 |
| absorbance_260_280_ratio_submitter | -9999.0 |
| am_environment | Marine |
| archive_ingestion_date | 2021-03-12 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1045/20210202_AM_MGE_UNSW_HVWCWDSXY/ |
| bioplatforms_project | Marine Microbes Project (MM) |
| biotic_relationship | Free-living |
| coastal_id | TP_150617_1 |
| collection_date | 2017-06-15T02:00:00 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| data_generated | 2021-03-12 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2021-03-11 |
| depth (m) | 3.0 |
| depth_lower (m) | 3.0 |
| depth_upper (m) | 3.0 |
| description | NovaSeq data package |
| dna_concentration | 9.32 |
| dna_concentration_method | Qubit |
| dna_concentration_submitter (ng/μL) | 12.9 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| fine_sediment (%) | 12.77 |
| fine_sediment_meth | meth_2.14 |
| flowcell | HVWCWDSXY |
| folder_name | 20210202_AM_MGE_UNSW_HVWCWDSXY |
| funding_agency | UTS; CRC food agility |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ_00002797] |
| gravel (%) | -9999.0 |
| insert_size_range | 200-1500 |
| lat_lon (decimal_degrees) | -34.010214 151.125875 |
| latitude (decimal_degrees) | -34.010214 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 151.125875 |
| nucl_acid_ext | meth_3.1.3 |
| number_of_raw_reads | 300472171.0 |
| number_pcr_cycle | 6.0 |
| omics | metagenomics |
| samp_collect_device | meth_1.5 |
| samp_mat_process | meth_1.5 |
| sample_attribution | UTS; CRC food agility |
| sample_database_file | AM_db_v4.2_202410080900.db |
| sample_id | 102.100.100/57806 |
| sample_metadata_ingest_date | 2024-06-21 15:32:26 |
| sample_metadata_ingest_file | coastalMM_Sediment_TT_source_docs_curated_20240620_FullREPLACE_xlsx |
| sample_site_location_description | Towra Point |
| sample_submission_date | 2021-03-11 |
| sample_submitter | Shauna Murray [https://orcid.org/0000-0001-7096-1307];Katherine Dafforn |
| sample_type | Sediment |
| sand (%) | -9999.0 |
| sedimentation_rate (g/cm2/yr) | -9999.0 |
| sequencer | NovaSeq 6000 |
| source_mat_id | 102.100.100/57806 |
| store_cond | meth_1.5 |
| ticket | BPAOPS-1045 |
| tot_carb (%) | 1.81 |
| tot_carb_meth | meth_2.24 |
| tot_nitro (%) | 0.02 |
| tot_nitro_meth | meth_2.24 |
| tot_phosp (%) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/57806 |
| utc_date_sampled | 2017-06-15 |
| utc_time_sampled | 02:00:00 |