Australian Microbiome Metagenomics Novaseq 102.100.100/403690
Dataset size is: 14.87 GiB
This dataset is currently under a short embargo period until June 26, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2024-06-26 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| absorbance_260_230_ratio | 0.015 |
| absorbance_260_280_ratio | 2.27 |
| allo (mg/m3) | 0.004 |
| allo_meth | meth_2.2 |
| alpha_beta_car (mg/m3) | 0.009 |
| alpha_beta_car_meth | meth_2.2 |
| am_environment | Marine |
| anth (mg/m3) | 1e-10 |
| anth_meth | meth_2.2 |
| archive_ingestion_date | 2024-04-03 |
| asta (mg/m3) | 0.004 |
| asta_meth | meth_2.2 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1571/20240321_MGE_UNSW_HVYGVDSX7/ |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 0.016 |
| but_fuco_meth | meth_2.2 |
| cantha (mg/m3) | 1e-10 |
| cantha_meth | meth_2.2 |
| chlorophyll_a (mg/m3) | 0.27 |
| chlorophyll_a_meth | meth_2.2 |
| chlorophyll_b (mg/m3) | 0.03 |
| chlorophyll_b_meth | meth_2.2 |
| chlorophyll_c1 (mg/m3) | 1e-10 |
| chlorophyll_c1_meth | meth_2.2 |
| chlorophyll_c2 (mg/m3) | 0.041 |
| chlorophyll_c2_meth | meth_2.2 |
| chlorophyll_c3 (mg/m3) | 0.02 |
| chlorophyll_c3_meth | meth_2.2 |
| chlorophyll_ctd (mg/m3) | 1.5953 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-04-18T22:33:00 |
| conductivity_aqueous (S/m) | 5.0779 |
| conductivity_aqueous_meth | meth_2.2 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| cphlide_a (mg/m3) | 0.008 |
| cphlide_a_meth | meth_2.2 |
| data_generated | 2024-04-03 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2024-03-28 |
| density (kg/m3) | 1024.4291 |
| density_meth | meth_2.2 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| diadino (mg/m3) | 0.007 |
| diadino_meth | meth_2.2 |
| diato (mg/m3) | 1e-10 |
| diato_meth | meth_2.2 |
| dino (mg/m3) | 1e-10 |
| dino_meth | meth_2.2 |
| dna_concentration | 3.35 |
| dna_concentration_method | Picogreen |
| dv_cphl_a (mg/m3) | 0.018 |
| dv_cphl_a_and_cphl_a (mg/m3) | 0.288 |
| dv_cphl_a_and_cphl_a_meth | meth_2.2 |
| dv_cphl_a_meth | meth_2.2 |
| dv_cphl_b (mg/m3) | 1e-10 |
| dv_cphl_b_and_cphl_b (mg/m3) | 0.03 |
| dv_cphl_b_and_cphl_b_meth | meth_2.2 |
| dv_cphl_b_meth | meth_2.2 |
| echin (mg/m3) | 1e-10 |
| echin_meth | meth_2.2 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility_code | ramaciotti |
| flowcell | HVYGVDSX7 |
| folder_name | 20240321_MGE_UNSW_HVYGVDSX7 |
| fuco (mg/m3) | 0.03 |
| fuco_meth | meth_2.2 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:East Australian Current [GAZ:00000352] |
| gyro (mg/m3) | 1e-10 |
| gyro_meth | meth_2.2 |
| hex_fuco (mg/m3) | 0.043 |
| hex_fuco_meth | meth_2.2 |
| imos_site_code | NRSPHB |
| insert_size_range | 350-500 |
| keto_hex_fuco (mg/m3) | 1e-10 |
| keto_hex_fuco_meth | meth_2.2 |
| lat_lon (decimal_degrees) | -34.1192 151.2267 |
| latitude (decimal_degrees) | -34.1192 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 151.2267 |
| lut (mg/m3) | 1e-10 |
| lut_meth | meth_2.2 |
| mg_dvp (mg/m3) | 1e-10 |
| mg_dvp_meth | meth_2.2 |
| neo (mg/m3) | 0.002 |
| neo_meth | meth_2.2 |
| nitrate (μmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | PHB20230418_0 |
| nrs_trip_code | PHB20230418 |
| nucl_acid_ext | meth_3.1.9 |
| number_of_raw_reads | 101134748.0 |
| number_pcr_cycle | 5.0 |
| omics | metagenomics |
| oxygen_ctd_vol (mL/L) | 205.549 |
| oxygen_ctd_vol_meth | meth_2.2 |
| perid (mg/m3) | 0.002 |
| perid_meth | meth_2.2 |
| phide_a (mg/m3) | 1e-10 |
| phide_a_meth | meth_2.2 |
| phosphate (μmol/L) | 1e-10 |
| phosphate_meth | meth_2.2 |
| phytin_a (mg/m3) | 1e-10 |
| phytin_a_meth | meth_2.2 |
| phytin_b (mg/m3) | 1e-10 |
| phytin_b_meth | meth_2.2 |
| pras (mg/m3) | 0.005 |
| pras_meth | meth_2.2 |
| pyrophide_a (mg/m3) | 1e-10 |
| pyrophide_a_meth | meth_2.2 |
| pyrophytin_a (mg/m3) | 1e-10 |
| pyrophytin_a_meth | meth_2.2 |
| salinity (PSU) | 35.3874 |
| salinity_lab (PSU) | 35.392 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403690 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Port Hacking |
| sample_submission_date | 2024-03-28 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 14.0 |
| secchi_depth_meth | meth_2.2 |
| sequencer | NovaSeq 6000 |
| silicate (μmol/L) | 0.4 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403690 |
| store_cond | meth_1.4 |
| temp (degC) | 22.3121 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1571 |
| tss (mg/L) | 0.3 |
| tss_meth | meth_2.2 |
| turbidity (NTU) | 0.0294 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403690 |
| utc_date_sampled | 2023-04-18 |
| utc_time_sampled | 22:33:00 |
| viola (mg/m3) | 0.001 |
| viola_meth | meth_2.2 |
| zea (mg/m3) | 0.022 |
| zea_meth | meth_2.2 |
| zooplankton_biomass (mg/m3) | 6.8534 |
| zooplankton_biomass_meth | meth_2.2int |