Australian Microbiome Metagenomics Novaseq 102.100.100/403689

North Stradbroke Island, MGE

Dataset size is: 12.98 GiB

Log in or Register to access resource
 
 

 

Data and Resources

Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2024-06-26
Access Control Mode date
Sequence Data Type illumina-shortread
absorbance_260_230_ratio 0.117
absorbance_260_280_ratio 1.569
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.018
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.07
ammonium_meth meth_2.2
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2024-04-03
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1571/20240321_MGE_UNSW_HVYGVDSX7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.012
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.247
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.007
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.026
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.017
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0932
chlorophyll_ctd_meth meth_2.2
collection_date 2023-05-03T23:20:00
conductivity_aqueous (S/m) 5.2319
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.012
cphlide_a_meth meth_2.2
data_generated 2024-04-03
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-03-28
density (kg/m3) 1024.0479
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.011
diadino_meth meth_2.2
diato (mg/m3) 0.002
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 9.55
dna_concentration_method Picogreen
dv_cphl_a (mg/m3) 0.035
dv_cphl_a_and_cphl_a (mg/m3) 0.282
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.007
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HVYGVDSX7
folder_name 20240321_MGE_UNSW_HVYGVDSX7
fuco (mg/m3) 0.034
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Moreton Bay Marine Park [GAZ:00088305]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.036
hex_fuco_meth meth_2.2
imos_site_code NRSNSI
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -27.345 153.562
latitude (decimal_degrees) -27.345
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 153.562
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.001
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code NSI20230503_0
nrs_trip_code NSI20230503
nucl_acid_ext meth_3.1.9
number_of_raw_reads 89727086.0
number_pcr_cycle 5.0
omics metagenomics
oxygen_ctd_vol (mL/L) 201.0329
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 0.003
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.08
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 4313.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.001
pras_meth meth_2.2
prochlorococcus (cells/mL) 17539.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.4301
salinity_lab (PSU) 35.423
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403689
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description North Stradbroke Island
sample_submission_date 2024-03-28
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 22.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 0.2
silicate_meth meth_2.2
source_mat_id 102.100.100/403689
store_cond meth_1.4
synechococcus (cells/mL) 64896.0
synechococcus_meth meth_2.2
temp (degC) 23.7349
temp_meth meth_2.2
ticket BPAOPS-1571
tss (mg/L) 0.6
tss_meth meth_2.2
turbidity (NTU) 0.2785
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403689
utc_date_sampled 2023-05-03
utc_time_sampled 23:20:00
viola (mg/m3) 0.001
viola_meth meth_2.2
zea (mg/m3) 0.062
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 18.4339
zooplankton_biomass_meth meth_2.2int