Australian Microbiome Metagenomics Novaseq 102.100.100/403630

Yongala, MGE

Dataset size is: 19.20 GiB

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Data and Resources

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2024-06-26
Access Control Mode date
Sequence Data Type illumina-shortread
absorbance_260_230_ratio 0.079
absorbance_260_280_ratio 1.924
allo (mg/m3) 0.004
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.017
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
anth (mg/m3) 0.002
anth_meth meth_2.2
archive_ingestion_date 2024-04-03
asta (mg/m3) 0.004
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1571/20240321_MGE_UNSW_HVYGVDSX7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.007
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.352
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.025
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.026
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.014
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.2252
chlorophyll_ctd_meth meth_2.2
collection_date 2023-05-16T00:39:00
conductivity_aqueous (S/m) 5.3825
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 0.016
cphlide_a_meth meth_2.2
data_generated 2024-04-03
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-03-28
density (kg/m3) 1023.0286
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.014
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 11.1
dna_concentration_method Picogreen
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.352
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.025
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HVYGVDSX7
folder_name 20240321_MGE_UNSW_HVYGVDSX7
fuco (mg/m3) 0.037
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ:00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.033
hex_fuco_meth meth_2.2
imos_site_code NRSYON
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.002
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20230516_0
nrs_trip_code YON20230516
nucl_acid_ext meth_3.1.9
number_of_raw_reads 129962276.0
number_pcr_cycle 5.0
omics metagenomics
oxygen_ctd_vol (mL/L) 175.3337
oxygen_ctd_vol_meth meth_2.2
perid (mg/m3) 0.002
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 9074.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.006
pras_meth meth_2.2
prochlorococcus (cells/mL) 5763.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 34.9167
salinity_lab (PSU) 34.921
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403630
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Yongala
sample_submission_date 2024-03-28
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 11.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
silicate (μmol/L) 1.6
silicate_meth meth_2.2
source_mat_id 102.100.100/403630
store_cond meth_1.4
synechococcus (cells/mL) 120145.0
synechococcus_meth meth_2.2
temp (degC) 25.8294
temp_meth meth_2.2
ticket BPAOPS-1571
tss (mg/L) 1.6
tss_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403630
utc_date_sampled 2023-05-16
utc_time_sampled 00:39:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 0.087
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 21.1771
zooplankton_biomass_meth meth_2.2int