Australian Microbiome Metagenomics Novaseq 102.100.100/401604
Dataset size is: 4.47 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2022-09-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/m54v-9b20 |
| absorbance_260_230_ratio | 1.821 |
| absorbance_260_280_ratio | 1.907 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 7.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| archive_ingestion_date | 2022-06-17 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1278/20220610_MGE_UNSW_HL7J5DSX3/ |
| bioplatforms_dataset_id | 102.100.100/401942 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0025 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.49 |
| boron_hot_cacl2_meth | meth_2.1 |
| collection_date | 2021-11-23T00:00:00 |
| collection_permit | SL102523 |
| color | DKBR |
| color_meth | meth_2.1 |
| conductivity (dS/m) | 0.022 |
| conductivity_meth | meth_2.1 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| crop_rotation_1yr_since_present | No crop |
| crop_rotation_2yrs_since_present | No crop |
| crop_rotation_3yrs_since_present | No crop |
| crop_rotation_4yrs_since_present | No crop |
| crop_rotation_5yrs_since_present | No crop |
| data_generated | 2022-06-17 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401942 |
| date_of_transfer | 2022-06-15 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| dna_concentration | 38.795 |
| dna_concentration_method | picogreen |
| dtpa_copper (mg/kg) | 0.28 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 104.1 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 3.97 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.29 |
| dtpa_zinc_meth | meth_2.1 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.3 National park |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 2.66 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.59 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.29 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.17 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.04 |
| exc_sodium_meth | meth_2.1 |
| facility_code | ramaciotti |
| flowcell | HL7J5DSX3 |
| folder_name | 20220610_MGE_UNSW_HL7J5DSX3 |
| funding_agency | Australian Microbiome Initiative; Australian Research Council |
| geo_loc_name | Australia:New South Wales |
| gravel (%) | 0 |
| gravel_meth | meth_2.1 |
| insert_size_range | 350-500 |
| lat_lon (decimal_degrees) | -33.3294 150.13972 |
| latitude (decimal_degrees) | -33.3294 |
| library_construction_protocol | Illumina DNA Prep |
| local_class | Kandosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 150.13972 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| number_of_raw_reads | 30120271.0 |
| number_pcr_cycle | 5.0 |
| omics | metagenomics |
| organic_carbon (%) | 2.29 |
| organic_carbon_meth | meth_2.1 |
| ph | 4.3 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.2 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 3.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 67.0 |
| potassium_colwell_meth | meth_2.1 |
| profile_position | Lower slope |
| samp_collect_device | meth_1.1 |
| sample_attribution | Jeff Powell; Western Sydney University |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/401604 |
| sample_metadata_ingest_date | 2022-12-08 08:12:16 |
| sample_metadata_ingest_file | Sample_submission_sheet_soil_20221207_schema_v3_vocab_2_0_3_AM0025_Powell_xlsx |
| sample_site_location_description | Newnes State Forest. 10.9km north east of Wallerawang. 16.8 km north of Lithgow. Plot is 400m from original BATS plot due to precipitous nature of that site. |
| sample_submission_date | 2022-06-15 |
| sample_submitter | Jeff Powell |
| sample_type | Soil |
| sequencer | NovaSeq 6000 |
| source_mat_id | 102.100.100/401604 |
| store_cond | frozen |
| sulphur (mg/kg) | 4.4 |
| sulphur_meth | meth_2.1 |
| synonyms | AMI005-0 |
| texture | 2.0 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-1278 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/401604 |
| utc_date_sampled | 2021-11-23 |
| vegetation_type | Woodland |