Australian Microbiome Metagenomics Novaseq 102.100.100/401565
Dataset size is: 4.28 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2022-09-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/krnh-rj70 |
| absorbance_260_230_ratio | 1.584 |
| absorbance_260_280_ratio | 1.897 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 17.4196054003 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| archive_ingestion_date | 2022-06-17 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1278/20220610_MGE_UNSW_HL7J5DSX3/ |
| bioplatforms_dataset_id | 102.100.100/401941 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0024 |
| biotic_relationship | Free-living |
| clay (%) | 3.31 |
| clay_meth | meth_1.23 |
| collection_date | 2021-02-03T00:00:00 |
| collection_permit | SL102346 |
| conductivity (dS/m) | 0.0268 |
| conductivity_meth | meth_2.1 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| crop_rotation_1yr_since_present | No crop |
| crop_rotation_2yrs_since_present | No crop |
| crop_rotation_3yrs_since_present | No crop |
| crop_rotation_4yrs_since_present | No crop |
| crop_rotation_5yrs_since_present | No crop |
| data_generated | 2022-06-17 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401941 |
| date_of_transfer | 2022-06-15 |
| density (kg/m3) | 3.1911471402 |
| density_meth | meth_1.23 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| dna_concentration | 16.714 |
| dna_concentration_method | picogreen |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.1 Strict nature reserve |
| env_medium | Soil [ENVO_00001998] |
| facility_code | ramaciotti |
| flowcell | HL7J5DSX3 |
| folder_name | 20220610_MGE_UNSW_HL7J5DSX3 |
| funding_agency | Australian Microbiome Initiative; Saving Our Species (SOS) Project Grant [DPIE (former OEH); NSW] |
| general_env_feature | Temperate |
| geo_loc_name | Australia:Sydney |
| insert_size_range | 350-500 |
| lat_lon (decimal_degrees) | -33.69687 150.71541 |
| latitude (decimal_degrees) | -33.69687 |
| library_construction_protocol | Illumina DNA Prep |
| local_class | Chromosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 150.71541 |
| microbial_biomass | 9.2974526291 |
| microbial_biomass_meth | meth_1.23 |
| nitrate_nitrogen (mg/kg) | 0.2766513761 |
| nitrate_nitrogen_meth | meth_2.1 |
| number_of_raw_reads | 27554312.0 |
| number_pcr_cycle | 5.0 |
| omics | metagenomics |
| organic_carbon (%) | 0.0070891915 |
| organic_carbon_meth | meth_2.1 |
| ph_solid_h2o | 5.08 |
| ph_solid_h2o_meth | meth_2.1 |
| samp_collect_device | meth_1.23 |
| samp_mat_process | meth_1.23 |
| sample_attribution | Kumari Rajapaksha Prathirajage; Western Sydney University |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/401565 |
| sample_metadata_ingest_date | 2022-12-08 16:41:48 |
| sample_metadata_ingest_file | Sample_submission_sheet_soil_20221207_schema_v3_vocab_2_0_3_AM0024_Powell_xlsx |
| sample_site_location_description | Wianamatta NR |
| sample_submission_date | 2022-06-15 |
| sample_submitter | Kumari Rajapaksha Prathirajage |
| sample_type | Soil |
| sand (%) | 83.09 |
| sand_meth | meth_1.23 |
| sequencer | NovaSeq 6000 |
| silt (%) | 13.6 |
| silt_meth | meth_1.23 |
| source_mat_id | 102.100.100/401565 |
| store_cond | frozen |
| synonyms | 18_2 |
| texture | Loamy sand |
| texture_meth | meth_1.23 |
| ticket | BPAOPS-1278 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/401565 |
| utc_date_sampled | 2021-02-03 |
| vegetation_dom_grasses (%) | Cyathochaeta diandra (10%); Microlaena stipoides (0.2%); Ptilothrix deusta (0.2%); Lomandra gracilis (0.2%); Entolasia stricta (0.3%) |
| vegetation_dom_grasses_meth | meth_2.28 |
| vegetation_dom_shrubs (%) | Daviesia squarrosa (1%); Melaleuca erubescens (0.2%); Melaleuca nodosa (4%); Kunzea ambigua (1%); Melaleuca decora (0.6%) |
| vegetation_dom_shrubs_meth | meth_2.28 |
| vegetation_dom_trees (%) | Corymbia gummifeia (8%); Eucalyptus sclerophylla (10%); Angophora bakeri (7%); Eucalyptus fibrosa (5%) |
| vegetation_dom_trees_meth | meth_2.28 |
| vegetation_type | Woodland |
| water_content (%) | 21.472392638 |
| water_content_soil_meth | meth_2.1 |