Australian Microbiome Metagenomics Novaseq 102.100.100/401092
Dataset size is: 8.36 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2022-12-12 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
Related Data | doi:10.25953/vp5c-pk95 |
absorbance_260_230_ratio | 0.435 |
absorbance_260_280_ratio | 1.929 |
absorbance_260_280_ratio_submitter | 1.892 |
absorbance_260_280_ratio_submitter_meth | meth_NanoPhotometer NP80 |
am_environment | Marine |
archive_ingestion_date | 2022-09-14 |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1318/20220902_MGE_UNSW_H7KCJDSX5_Q0009190/ |
bioplatforms_dataset_id | 102.100.100/401931 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0015 |
collection_date | 2020-12-01T08:00:00 |
conversion_software | bcl2fastq |
conversion_software_version | v2.20 |
data_generated | 2022-09-14 |
data_type | MGE |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401931 |
date_of_transfer | 2022-09-13 |
depth (m) | 0.0 |
depth_lower (m) | 1e-10 |
depth_upper (m) | 0.0 |
description | NovaSeq data package |
dna_concentration | 11.787 |
dna_concentration_method | picogreen |
dna_concentration_submitter (ng/μL) | 9.65 |
dna_concentration_submitter_meth | meth_NanoPhotometer NP80 |
env_broad_scale | 6 Water |
env_local_scale | 6.6 Estuary/coastal waters |
env_medium | Saline water [ENVO_00002010] |
facility_code | ramaciotti |
flowcell | H7KCJDSX5 |
folder_name | 20220902_MGE_UNSW_H7KCJDSX5_Q0009190 |
funding_agency | Australian Microbiome Initiative |
general_env_feature | Coastal (coastal terrestrial including cliff; rocky shore) |
geo_loc_name | Australia:New South Wales |
insert_size_range | 350-500 |
lat_lon (decimal_degrees) | -31.43004 152.904423 |
latitude (decimal_degrees) | -31.43004 |
library_construction_protocol | Illumina DNA Prep |
longitude (decimal_degrees) | 152.904423 |
nucl_acid_ext | Qiagen PowerWater Kit |
number_of_raw_reads | 57106177.0 |
number_pcr_cycle | 5.0 |
omics | metagenomics |
ph | 6.79 |
ph_meth | meth_Horiba U-50 water quality meter |
salinity (PSU) | 29.0 |
salinity_meth | meth_Horiba U-50 water quality meter |
samp_collect_device | meth_1L bottle rinsed in 10% bleach solution |
samp_mat_process | Filtered through 0.22um Sterivex filters using a peristaltic pump |
samp_size (L) | 1.0 |
samp_vol_we_dna_ext (L) | 1.0 |
sample_attribution | Alessandra Suzzi |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_id | 102.100.100/401092 |
sample_metadata_ingest_date | 2024-02-01 13:24:30 |
sample_metadata_ingest_file | AM0015Huggett_Sample_Submission_sheet_20210916_schema_v3_vocab_2_0_3_SUZ9963_edited2_coastal_water_xlsx |
sample_site_location_description | HastingsRiver_S1_5 |
sample_submission_date | 2022-09-13 |
sample_submitter | Alessandra Suzzi |
sample_type | Coastal water |
sequencer | NovaSeq 6000 |
source_mat_id | 102.100.100/401092 |
store_cond | frozen (-80°) |
temp (degC) | 21.53 |
temp_meth | meth_Horiba U-50 water quality meter |
ticket | BPAOPS-1318 |
turbidity (NTU) | 3.0 |
turbidity_meth | meth_Horiba U-50 water quality meter |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/401092 |
utc_date_sampled | 2020-12-01 |
utc_time_sampled | 08:00:00 |
vegetation_type | Seagrass bed/meadow |