Australian Microbiome Metagenomics Novaseq 102.100.100/400668

Port Hacking, MGE

Dataset size is: 8.64 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2022-07-05
Access Control Mode date
Sequence Data Type illumina-shortread
Related Data doi:10.25953/z3tc-a185
absorbance_260_230_ratio 0.058
absorbance_260_280_ratio 0.976
alkalinity (μmol/kg) 2320.54
alkalinity_meth meth_2.2
allo (mg/m3) 0.018
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.027
alpha_beta_car_meth meth_2.2
am_environment Marine
anth (mg/m3) 0.003
anth_meth meth_2.2
archive_ingestion_date 2022-04-08
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1216/20220401_MGE_UNSW_HKJWLDSX3/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.016
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.888
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.117
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.014
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.121
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.05
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.1318
chlorophyll_ctd_meth meth_2.2
collection_date 2020-11-10T21:40:00
conductivity_aqueous (S/m) 4.7861
conductivity_aqueous_meth meth_2.2
conversion_software bcl2fastq
conversion_software_version v2.20
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_generated 2022-04-08
data_type MGE
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-04-06
density (kg/m3) 1025.1808
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description NovaSeq data package
diadino (mg/m3) 0.029
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration 1.98
dna_concentration_method Qubit
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.888
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.117
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility_code ramaciotti
flowcell HKJWLDSX3
folder_name 20220401_MGE_UNSW_HKJWLDSX3
fuco (mg/m3) 0.211
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.066
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
insert_size_range 350-500
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
library_construction_protocol Illumina DNA Prep
longitude (decimal_degrees) 151.2267
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.011
neo_meth meth_2.2
nrs_sample_code PHB20201110_0
nrs_trip_code PHB20201110
nucl_acid_ext meth_3.1.9
number_of_raw_reads 59605355.0
number_pcr_cycle 8.0
omics metagenomics
perid (mg/m3) 0.007
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 21108.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.032
pras_meth meth_2.2
prochlorococcus (cells/mL) 2287.5
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
salinity (PSU) 35.3687
salinity_lab (PSU) 35.373
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400668
sample_integrity_warnings WARNING: Storage or transport conditions compromised
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2022-04-06
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencer NovaSeq 6000
source_mat_id 102.100.100/400668
store_cond meth_1.4
synechococcus (cells/mL) 31551.5
synechococcus_meth meth_2.2int
temp (degC) 19.504
temp_meth meth_2.2
ticket BPAOPS-1216
total_co2 (μmol/kg) 2043.06
total_co2_meth meth_2.2
tss (mg/L) 0.4
tss_meth meth_2.2int
turbidity (NTU) 0.0667
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400668
utc_date_sampled 2020-11-10
utc_time_sampled 21:40:00
viola (mg/m3) 0.008
viola_meth meth_2.2
zea (mg/m3) 0.018
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 21.2326
zooplankton_biomass_meth meth_2.2int