Australian Microbiome Metagenomics Novaseq 102.100.100/139564
Dataset size is: 7.69 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2021-09-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/nhv9-3503 |
| absorbance_260_230_ratio | 2.179 |
| absorbance_260_280_ratio | 2.071 |
| am_environment | Marine |
| archive_ingestion_date | 2021-06-09 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1080/20210604_AM_MGE_UNSW_H72YYDSX2/ |
| bioplatforms_dataset_id | 102.100.100/401919 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0005 |
| biotic_relationship | Free-living |
| collection_date | 2020-10-20T09:45:00 |
| conversion_software | bcl2fastq2 |
| conversion_software_version | v2.20 |
| data_generated | 2021-06-09 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401919 |
| date_of_transfer | 2021-06-08 |
| description | NovaSeq data package |
| dna_concentration | 107.98 |
| dna_concentration_method | picogreen |
| dna_concentration_submitter_meth | Qubit HS assay |
| env_broad_scale | 7.1 Coastal water (Estuary and coastal water) |
| env_local_scale | 7.1.1 Coastal water- intensive use |
| env_medium | Fresh water [ENVO_00002011] |
| facility_code | ramaciotti |
| flowcell | H72YYDSX2 |
| folder_name | 20210608_AM_MGE_UNSW_H72YYDSX2 |
| funding_agency | Australian Microbiome Initiative |
| general_env_feature | Riverine (rivers and streams) |
| geo_loc_name | Queensland |
| insert_size_range | 350-500 |
| lat_lon (decimal_degrees) | -27.329583 153.087083 |
| latitude (decimal_degrees) | -27.329583 |
| library_construction_protocol | Illumina DNA Prep |
| longitude (decimal_degrees) | 153.087083 |
| nucl_acid_ext | 1.16 |
| number_of_raw_reads | 50236857.0 |
| number_pcr_cycle | 5.0 |
| omics | metagenomics |
| samp_collect_device | meth_1.16 |
| samp_mat_process | meth_1.16 |
| sample_attribution | Chris Rinke |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/139564 |
| sample_metadata_ingest_date | 2023-12-12 13:58:45 |
| sample_metadata_ingest_file | AM_ContextualMetadata_AM0005_Rinke_newtemplate_Feb22_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Shorncliffe |
| sample_submission_date | 2021-06-08 |
| sample_submitter | Apoorva Prabhu |
| sample_type | Coastal water |
| sequencer | NovaSeq 6000 |
| source_mat_id | 102.100.100/139564 |
| store_cond | meth_rt |
| ticket | BPAOPS-1080 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139564 |
| utc_date_sampled | 2020-10-20 |
| utc_time_sampled | 09:45:00 |
| vegetation_type | Other |