Australian Microbiome Metagenomics Novaseq 102.100.100/139544
Dataset size is: 3.07 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2020-12-28 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
Related Data | doi:10.25953/nhv9-3503 |
absorbance_260_230_ratio | 0.753 |
absorbance_260_280_ratio | 1.604 |
am_environment | Marine |
archive_ingestion_date | 2020-09-30 |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-961/AM_MGE_UNSW_HTW7LDRXX/ |
bioplatforms_dataset_id | 102.100.100/401919 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0005 |
biotic_relationship | Free-living |
collection_date | 2020-05-05T09:04:00 |
conversion_software | bcl2fastq2 |
conversion_software_version | v2.20 |
data_generated | 2020-09-30 |
data_type | MGE |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401919 |
date_of_transfer | 2020-09-29 |
depth (m) | 0.0 |
depth_lower (m) | 0.0 |
depth_upper (m) | 0.0 |
description | NovaSeq data package |
dna_concentration | 11.9 |
dna_concentration_method | PicoGreen |
dna_concentration_submitter_meth | Qubit HS assay |
env_broad_scale | 7.1 Coastal water (Estuary and coastal water) |
env_local_scale | 7.1.1 Coastal water- intensive use |
env_medium | Fresh water [ENVO_00002011] |
facility_code | ramaciotti |
flowcell | HTW7LDRXX |
folder_name | AM_MGE_UNSW_HTW7LDRXX |
funding_agency | Australian Microbiome Initiative |
general_env_feature | Riverine (rivers and streams) |
geo_loc_name | Australia:Queensland [GAZ_00002792] |
insert_size_range | 200-1500 |
lat_lon (decimal_degrees) | -27.50525 152.969917 |
latitude (decimal_degrees) | -27.50525 |
library_construction_protocol | Nextera DNA Flex |
longitude (decimal_degrees) | 152.969917 |
nucl_acid_ext | meth_1.16 |
number_of_raw_reads | 19740746.0 |
number_pcr_cycle | 5.0 |
omics | metagenomics |
salinity (PSU) | 15.4 |
salinity_meth | meth_Electrical conductivity |
samp_collect_device | meth_1.16 |
samp_mat_process | meth_1.16 |
sample_attribution | Chris Rinke |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_id | 102.100.100/139544 |
sample_metadata_ingest_date | 2023-12-12 13:58:45 |
sample_metadata_ingest_file | AM_ContextualMetadata_AM0005_Rinke_newtemplate_Feb22_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
sample_site_location_description | Indooroopilly |
sample_submission_date | 2020-09-29 |
sample_submitter | Apoorva Prabhu |
sample_type | Coastal water |
sequencer | NovaSeq 6000 |
source_mat_id | 102.100.100/139544 |
store_cond | meth_rt |
temp (degC) | 23.41 |
temp_meth | meth_Horiba sampler |
ticket | BPAOPS-961 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139544 |
utc_date_sampled | 2020-05-05 |
utc_time_sampled | 09:04:00 |
vegetation_type | Other |