Australian Microbiome Metagenomics Novaseq 102.100.100/138609
Dataset size is: 5.35 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2022-08-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| Related Data | doi:10.25953/ep2x-jh13 |
| absorbance_260_230_ratio | 1.852 |
| absorbance_260_280_ratio | 1.924 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 2.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| archive_ingestion_date | 2022-05-27 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/metagenomics-novaseq/ramaciotti/BPAOPS-1268/20220520_MGE_UNSW_HJWT7DSX3/ |
| bioplatforms_dataset_id | 102.100.100/401950 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_DNP |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.13 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 9.72 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 71.93 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2021-06-15T02:30:00 |
| color | GRYW |
| color_meth | meth_2.1 |
| conductivity (dS/m) | 0.011 |
| conductivity_meth | meth_2.1 |
| conversion_software | bcl2fastq |
| conversion_software_version | v2.20 |
| data_generated | 2022-05-27 |
| data_type | MGE |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401950 |
| date_of_transfer | 2022-05-26 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | NovaSeq data package |
| dna_concentration | 19.626 |
| dna_concentration_method | picogreen |
| dtpa_copper (mg/kg) | 0.33 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 18.7 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 11.32 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.07 |
| dtpa_zinc_meth | meth_2.1 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1 Nature conservation |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.27 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.83 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.38 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.03 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.04 |
| exc_sodium_meth | meth_2.1 |
| facility_code | ramaciotti |
| fine_sand (%) | 15.41 |
| fine_sand_meth | meth_2.1 |
| flowcell | HJWT7DSX3 |
| folder_name | 20220520_MGE_UNSW_HJWT7DSX3 |
| general_env_feature | Tropical (wet) |
| geo_loc_name | Australia:Northern Territory [GAZ_00002787] |
| gravel (%) | 5 |
| gravel_meth | meth_2.1 |
| insert_size_range | 350-500 |
| lat_lon (decimal_degrees) | -13.98404 136.48354 |
| latitude (decimal_degrees) | -13.98404 |
| library_construction_protocol | Illumina DNA Prep |
| local_class | Tenosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 136.48354 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| number_of_raw_reads | 35862350.0 |
| number_pcr_cycle | 5.0 |
| omics | metagenomics |
| organic_carbon (%) | 0.8 |
| organic_carbon_meth | meth_2.1 |
| ph | 4.9 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.9 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 1e-10 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 19.0 |
| potassium_colwell_meth | meth_2.1 |
| samp_collect_device | meth_1.1 |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/138609 |
| sample_metadata_ingest_date | 2022-08-08 14:21:15 |
| sample_metadata_ingest_file | Groot_metadata_UTC_convert_xlsx |
| sample_metadata_update_history | Groote_CSBP_211012_PREPAID_001_AM_SOIL_format_UPDATE_xlsx; AM_enviro_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_submission_date | 2022-05-26 |
| sample_submitter | Bissett |
| sample_type | Soil |
| sand (%) | 87.34 |
| sand_meth | meth_2.1 |
| sequencer | NovaSeq 6000 |
| silt (%) | 2.93 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/138609 |
| store_cond | frozen (DNA extraction) | air-dried (physchem) |
| sulphur (mg/kg) | 1.4 |
| sulphur_meth | meth_2.1 |
| texture | 1.0 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-1268 |
| total_nitrogen (mg/kg) | 0.04 |
| total_nitrogen_meth | meth_2.1 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138609 |
| utc_date_sampled | 2021-06-15 |
| utc_time_sampled | 02:30:00 |
| vegetation_total_cover (%) | 80.0 |
| vegetation_type | Mangrove |